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97L
Euk-VirYaba_monkey_tumor_virus
97L__NP_938352__Yaba_monkey_tumor_virus__38804
Identity
- Accession:
- NP_938352 ↗
- Protein ID:
- 97L
- Kingdom:
- euk
Quality
88.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Yatapoxvirus›
Yaba_monkey_tumor_virus
TaxID: 38804
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-120
Domain cluster:
rep: virion_morphogenesis_core_protein__YP_010085396__Eastern_grey_kangaroopox_virus__2042482__D1-120
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04924.18 best | Pox_A6 | 194.7 | 3.30e-57 | 100.0% | 32.4% |
D2
medium
residues 129-175_207-254
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04924.18 best | Pox_A6 | 71.1 | 1.30e-19 | 54.7% | 13.8% |
| PF04924.18 | Pox_A6 | 69.1 | 4.90e-19 | 50.5% | 12.7% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4he8D00 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.67 | 48.0 | 4.06e-01 | 75.8% | 95.6% |
| 6humG01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.63 | 44.0 | 3.76e-01 | 73.7% | 96.2% |
| 2l1lB00 | 1.20.1440.250 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.60 | 55.0 | 4.99e-01 | 100.0% | 94.5% |
| 6whbA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 49.0 | 3.50e-01 | 100.0% | 69.0% |
| 4iggB02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 40.0 | 3.70e-01 | 78.9% | 63.6% |
| 3c5wA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.52 | 47.0 | 3.53e-01 | 98.9% | 51.3% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 42.0 | 4.07e-01 | 88.4% | 89.0% |
| 2c0gA02 | 1.20.1150.12 | Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain | 0.52 | 41.0 | 4.00e-01 | 91.6% | 77.4% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.50 | 41.0 | 3.96e-01 | 89.5% | 91.8% |
| 3caxA01 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.50 | 38.0 | 2.90e-01 | 80.0% | 43.8% |
| 1nktA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.50 | 35.0 | 2.94e-01 | 73.7% | 96.6% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2485663 | 7021.1.1.1 ↗ | alpha bundles › viral membrane assembly protein A6 homolog › viral membrane assembly protein A6 homolog › viral membrane assembly protein A6 homolog › Pox_A6 | 0.77 | 70.0 | 5.10e-01 | 100.0% | 51.4% |
| 1000622 | 109.4.1.251 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CRM1_repeat_3 | 0.60 | 55.0 | 4.99e-01 | 100.0% | 94.5% |
| 3498366 | 109.4.1.1577 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS7_HB | 0.59 | 51.0 | 3.68e-01 | 97.9% | 34.4% |
| 4029372 | 109.4.1.528 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF | 0.58 | 51.0 | 3.39e-01 | 96.8% | 27.8% |
| 3572303 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.57 | 43.0 | 3.87e-01 | 80.0% | 65.4% |
| 4044771 | 109.4.1.546 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ecm29 | 0.56 | 48.0 | 4.11e-01 | 98.9% | 78.2% |
| 3971927 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.56 | 40.0 | 4.24e-01 | 84.2% | 84.5% |
| 3934372 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 48.0 | 3.81e-01 | 94.7% | 72.5% |
| 4027212 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.54 | 44.0 | 3.93e-01 | 89.5% | 93.6% |
| 3431118 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.54 | 42.0 | 4.03e-01 | 83.2% | 80.9% |
| 4049949 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.54 | 39.0 | 4.07e-01 | 78.9% | 81.1% |
| 4932209 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.54 | 37.0 | 3.95e-01 | 87.4% | 83.7% |
| 4930533 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.53 | 39.0 | 4.17e-01 | 83.2% | 90.0% |
| 5012500 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.53 | 38.0 | 3.98e-01 | 84.2% | 83.5% |
| 4498502 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.52 | 39.0 | 3.90e-01 | 80.0% | 77.9% |
| 5006027 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.52 | 37.0 | 3.74e-01 | 81.1% | 73.7% |
| 5034771 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.52 | 38.0 | 4.08e-01 | 80.0% | 89.2% |
| 4964136 | 3843.1.1.6 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF | 0.51 | 36.0 | 3.85e-01 | 84.2% | 83.5% |
| 3601090 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 44.0 | 3.49e-01 | 96.8% | 78.0% |
| 3299098 | 109.4.1.172 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_C | 0.50 | 45.0 | 3.74e-01 | 100.0% | 72.9% |