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A6_protein
Euk-VirSalmon_gill_poxvirus
A6_protein__YP_009162476__Salmon_gill_poxvirus__1680908
Identity
- Accession:
- YP_009162476 ↗
- Protein ID:
- A6_protein
- Kingdom:
- euk
Quality
57.2
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Salmonpoxvirus›
Salmon_gill_poxvirus
TaxID: 1680908
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-123
Domain cluster:
rep: virion_morphogenesis_core_protein__YP_010085396__Eastern_grey_kangaroopox_virus__2042482__D1-120
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04924.18 best | Pox_A6 | 24.2 | 2.20e-05 | 96.8% | 25.9% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 39.0 | 3.91e-01 | 100.0% | 59.3% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.63 | 42.0 | 3.39e-01 | 100.0% | 34.3% |
| 2xgjA04 | 1.20.1500.20 | Mainly Alpha › Up-down Bundle › YheA-like fold › | 0.62 | 35.0 | 3.47e-01 | 100.0% | 50.8% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 27.0 | 2.88e-01 | 71.5% | 45.3% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 27.0 | 2.92e-01 | 72.4% | 46.8% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 41.0 | 4.03e-01 | 100.0% | 65.4% |
| 3c8gD00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.58 | 39.0 | 3.60e-01 | 96.7% | 52.2% |
| 1jmoA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.57 | 41.0 | 3.36e-01 | 74.8% | 85.0% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.56 | 40.0 | 3.97e-01 | 73.2% | 90.8% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.56 | 43.0 | 4.13e-01 | 100.0% | 71.6% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.55 | 37.0 | 4.16e-01 | 92.7% | 90.2% |
| 1yuzB01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 41.0 | 4.04e-01 | 100.0% | 72.5% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 37.0 | 3.63e-01 | 87.8% | 66.2% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.53 | 38.0 | 3.15e-01 | 92.7% | 43.1% |
| 2pfdA03 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.52 | 47.0 | 3.99e-01 | 100.0% | 72.9% |
| 2jokA01 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.52 | 38.0 | 3.46e-01 | 78.0% | 69.7% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.52 | 40.0 | 3.79e-01 | 85.4% | 82.1% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.51 | 34.0 | 3.93e-01 | 89.4% | 93.3% |
| 8h8jC01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 41.0 | 3.28e-01 | 89.4% | 84.5% |
| 4gc0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 46.0 | 3.64e-01 | 100.0% | 79.1% |
| 1g12A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.51 | 38.0 | 3.45e-01 | 78.9% | 94.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2485671 | 7034.1.1.1 ↗ | alpha arrays › Protein A6 N-terminal domain › Protein A6 N-terminal domain › Protein A6 N-terminal domain › Pox_A6 | 0.84 | 76.0 | 7.80e-01 | 100.0% | 100.0% |
| 4854901 | 7021.1.1.1 ↗ | alpha bundles › viral membrane assembly protein A6 homolog › viral membrane assembly protein A6 homolog › viral membrane assembly protein A6 homolog › Pox_A6 | 0.83 | 77.0 | 7.47e-01 | 100.0% | 90.2% |
| 3627128 | 192.29.1.24 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM237 | 0.67 | 33.0 | 2.92e-01 | 100.0% | 31.0% |
| 4304766 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.65 | 33.0 | 3.20e-01 | 100.0% | 43.6% |
| 4973733 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.60 | 38.0 | 3.92e-01 | 100.0% | 65.0% |
| 4998644 | 1076.1.1.0 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related | 0.60 | 54.0 | 4.10e-01 | 99.2% | 100.0% |
| 3174564 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 39.0 | 3.13e-01 | 70.7% | 83.7% |
| 4976398 | 622.1.1.0 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain | 0.56 | 39.0 | 4.28e-01 | 91.9% | 87.4% |
| 4029940 | 604.5.1.44 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › EMC6 | 0.55 | 37.0 | 4.19e-01 | 91.1% | 89.5% |
| 3191445 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 48.0 | 3.98e-01 | 100.0% | 92.6% |
| 3900667 | 150.3.1.6 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL10 | 0.52 | 40.0 | 3.72e-01 | 100.0% | 64.5% |
| 3810024 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.50 | 42.0 | 3.85e-01 | 100.0% | 67.6% |
D2
medium
residues 230-380