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AAA_ATPase_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

AAA_ATPase_domain_containing_protein__YP_009480845__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480845 ↗
Protein ID:
AAA_ATPase_domain_containing_protein
Kingdom:
euk

Quality

58.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 207-376
PDB
Domain cluster: rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00004.36 best AAA 59.6 6.10e-16 66.5% 95.4%
D2 medium residues 39-149
PDB
D3 medium residues 444-496
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 48.0 4.21e-01 84.9% 68.7%
3eujB00 1.10.225.40 Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain 0.61 43.0 3.65e-01 75.5% 48.9%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.60 45.0 3.66e-01 100.0% 42.3%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.60 49.0 4.66e-01 92.5% 83.9%
7osfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 47.0 3.25e-01 94.3% 29.2%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 45.0 4.10e-01 92.5% 63.9%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 43.0 3.87e-01 81.1% 56.6%
3ttvA02 1.20.1370.20 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain 0.58 41.0 3.39e-01 75.5% 38.5%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 41.0 3.57e-01 75.5% 50.0%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 49.0 3.24e-01 100.0% 51.9%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 35.0 3.34e-01 75.5% 57.1%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.54 41.0 3.03e-01 86.8% 31.0%
2l35A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.53 36.0 3.48e-01 71.7% 76.2%
1v92A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 41.0 4.34e-01 100.0% 100.0%
3r1vA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.53 37.0 3.05e-01 81.1% 96.0%
3we0A03 1.10.405.40 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › 0.52 38.0 2.90e-01 81.1% 37.2%
1zbsA03 1.10.720.160 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.50 39.0 3.36e-01 86.8% 73.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4561719 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.69 46.0 3.41e-01 81.1% 26.8%
3587439 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.65 37.0 3.73e-01 81.1% 54.5%
5062656 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.64 53.0 4.56e-01 92.5% 89.4%
4081821 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 46.0 4.51e-01 83.0% 73.3%
3201095 103.1.1.22 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl 0.60 48.0 4.44e-01 100.0% 68.6%
3988410 4125.1.1.3 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like › DUF1129 0.59 49.0 4.35e-01 100.0% 78.8%
3428162 103.1.1.22 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl 0.59 47.0 4.65e-01 98.1% 83.6%
1389183 6161.1.1.1 ↗ a+b two layers › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › DUF5517 0.57 43.0 3.72e-01 83.0% 58.1%
3900370 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.57 47.0 4.22e-01 92.5% 68.0%
3382362 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.57 47.0 3.27e-01 100.0% 89.8%
3940065 197.1.1.5 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › SNX17-31_F2_FERM 0.56 45.0 4.41e-01 90.6% 85.0%
1765837 148.1.3.34 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Gp44_lid 0.56 45.0 4.67e-01 92.5% 100.0%
3628583 108.1.1.1 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.55 43.0 3.72e-01 90.6% 95.6%
3737617 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.55 43.0 4.20e-01 100.0% 81.7%
3743465 3184.1.1.1 ↗ alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge 0.50 35.0 3.36e-01 75.5% 60.0%