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AB036666.1__BAA89655.1__X__00029

Bact-Vir

AB036666.1__BAA89655.1__X__00029

Identity

Accession:
AB036666 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-73
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11149.14 best DUF2924 58.7 1.10e-15 93.2% 47.4%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.78 55.0 6.23e-01 74.0% 98.2%
3cl3A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.74 47.0 4.52e-01 71.2% 56.0%
3crmA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.65 46.0 4.40e-01 74.0% 89.3%
2pbeA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.64 45.0 3.77e-01 74.0% 76.2%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.58 34.0 3.66e-01 82.2% 66.7%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.55 36.0 3.84e-01 87.7% 75.8%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 39.0 3.87e-01 87.7% 70.9%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.54 42.0 3.53e-01 86.3% 78.2%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.53 39.0 3.42e-01 95.9% 48.7%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 39.0 3.15e-01 83.6% 49.3%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.51 34.0 3.06e-01 78.1% 49.5%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 35.0 3.61e-01 74.0% 97.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964225 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.88 60.0 6.38e-01 71.2% 81.5%
3493457 3949.1.1.0 alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.85 60.0 6.35e-01 74.0% 87.7%
3272915 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.80 55.0 6.26e-01 71.2% 96.4%
3127 130.1.1.7 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Endonuc-dimeris 0.78 55.0 6.27e-01 74.0% 100.0%
3198528 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.77 52.0 5.86e-01 71.2% 92.7%
3880529 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.74 53.0 5.59e-01 74.0% 84.6%
4649575 130.1.1.45 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF29669 0.70 47.0 5.11e-01 71.2% 85.0%
3512653 130.1.1.2 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.70 47.0 5.28e-01 71.2% 94.5%
3846608 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 48.0 3.12e-01 74.0% 17.2%
3723625 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.60 39.0 3.27e-01 89.0% 36.3%
5010630 6132.1.1.0 alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.60 41.0 4.40e-01 80.8% 81.5%
5017842 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.59 44.0 4.21e-01 79.5% 74.1%
4650016 3949.1.1.1 alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.57 43.0 4.48e-01 83.6% 96.9%
3182801 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.56 43.0 3.54e-01 87.7% 46.2%
4975992 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 33.0 3.06e-01 79.5% 45.3%
5024245 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.56 34.0 3.01e-01 74.0% 40.9%
4157142 150.5.1.7 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Mis12 0.55 39.0 3.34e-01 74.0% 47.0%
4358465 103.7.1.2 alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › DUF494 0.54 37.0 3.63e-01 91.8% 63.7%
3959648 3601.1.1.0 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.53 38.0 3.10e-01 79.5% 76.9%
3759576 2484.1.1.288 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PML_C 0.52 39.0 2.75e-01 98.6% 23.5%
3314379 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.51 40.0 4.13e-01 86.3% 87.1%
4157611 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 35.0 2.31e-01 72.6% 44.0%
3316706 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.50 37.0 3.42e-01 87.7% 59.0%
D2 high residues 87-135
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11149.14 best DUF2924 39.8 7.40e-10 100.0% 36.3%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.85 66.0 5.22e-01 83.7% 49.5%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.81 61.0 4.82e-01 81.6% 46.0%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.72 61.0 4.79e-01 95.9% 57.7%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.71 61.0 4.86e-01 98.0% 61.0%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 53.0 4.16e-01 87.8% 67.3%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.67 54.0 4.18e-01 93.9% 63.9%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.63 55.0 3.75e-01 100.0% 52.9%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 48.0 3.42e-01 89.8% 91.2%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.62 52.0 4.40e-01 93.9% 68.3%
1o70A01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.62 44.0 3.26e-01 77.6% 42.9%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 43.0 3.34e-01 83.7% 33.1%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.60 42.0 4.51e-01 100.0% 92.5%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 46.0 3.73e-01 93.9% 45.9%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.58 44.0 3.64e-01 91.8% 45.7%
2vgnA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.57 44.0 3.28e-01 85.7% 78.0%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.55 47.0 4.01e-01 100.0% 96.5%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.55 33.0 3.35e-01 77.6% 51.0%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.71e-01 100.0% 63.0%
2qxlB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 47.0 3.45e-01 100.0% 89.6%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 47.0 3.85e-01 100.0% 86.8%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 41.0 3.39e-01 91.8% 81.9%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.53 42.0 3.56e-01 100.0% 88.9%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.53 37.0 3.42e-01 77.6% 60.9%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.54e-01 100.0% 66.7%
4gn1C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.19e-01 100.0% 52.0%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.41e-01 100.0% 65.3%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.40e-01 93.9% 51.4%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.43e-01 95.9% 91.9%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 42.0 3.39e-01 98.0% 63.4%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 36.0 2.48e-01 81.6% 83.5%
3bexA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 3.40e-01 98.0% 89.3%
4gniB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 3.12e-01 100.0% 95.4%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 44.0 3.25e-01 100.0% 85.3%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 40.0 3.00e-01 95.9% 41.8%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.50 39.0 3.14e-01 98.0% 75.4%
3agkA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.50 42.0 3.15e-01 95.9% 92.7%
8oqxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 45.0 3.43e-01 100.0% 94.7%
1y9wA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 41.0 3.28e-01 93.9% 51.9%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4002401 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.88 67.0 5.14e-01 81.6% 41.9%
3243855 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.86 65.0 5.11e-01 81.6% 46.0%
1384885 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.86 65.0 5.29e-01 81.6% 51.1%
3258975 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.85 64.0 5.01e-01 81.6% 44.0%
3518621 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 63.0 4.64e-01 98.0% 48.8%
3376270 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.72 62.0 5.47e-01 100.0% 70.7%
4550200 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 61.0 4.71e-01 95.9% 54.5%
4994455 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 39.0 3.10e-01 77.6% 25.0%
4423692 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.68 52.0 3.77e-01 85.7% 59.3%
3923845 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 56.0 4.12e-01 95.9% 53.3%
3402001 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 50.0 4.19e-01 85.7% 74.4%
4834236 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 53.0 4.02e-01 95.9% 48.1%
5001238 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 42.0 3.29e-01 81.6% 30.0%
4034394 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 48.0 3.79e-01 85.7% 62.7%
3222713 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 51.0 4.17e-01 98.0% 59.0%
4427813 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.62 48.0 3.92e-01 91.8% 46.7%
5043286 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.61 42.0 3.58e-01 73.5% 83.5%
3577804 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 51.0 4.06e-01 100.0% 92.7%
4174628 3816.1.1.1 beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD 0.59 44.0 3.92e-01 87.8% 95.0%
3190458 3484.1.1.2 a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.58 48.0 3.41e-01 100.0% 45.7%
4188283 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 39.0 3.40e-01 71.4% 87.5%
3965099 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 45.0 3.66e-01 91.8% 46.7%
3245311 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 47.0 3.76e-01 95.9% 71.4%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 4.06e-01 75.5% 100.0%
5041570 3859.1.1.0 alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain 0.56 41.0 3.15e-01 83.7% 54.4%
3400699 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.55 40.0 3.32e-01 83.7% 94.3%
3386602 2484.2.1.1 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N 0.55 40.0 3.81e-01 85.7% 83.1%
4981101 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.55 41.0 3.07e-01 83.7% 74.8%
4272595 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 47.0 4.69e-01 100.0% 96.0%
3186776 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 35.0 2.20e-01 93.9% 9.6%
2469865 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 43.0 3.49e-01 93.9% 47.9%
4120366 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.52 43.0 4.24e-01 100.0% 90.9%
1489671 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.51 42.0 4.11e-01 100.0% 87.5%
3583571 833.1.1.0 a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 0.51 43.0 3.45e-01 100.0% 88.7%
3958788 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 43.0 3.45e-01 100.0% 68.2%
3967506 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.51 42.0 2.77e-01 100.0% 57.9%
3217638 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 35.0 3.30e-01 83.7% 94.7%