←Back to structures

AB063393.2__BAC55283.1__X__00003

Bact-Vir

AB063393.2__BAC55283.1__X__00003

Identity

Accession:
AB063393 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Helvetiavirae› Dividoviricota› Laserviricetes› Halopanivirales› Matsushitaviridae› Hukuchivirus› Thermus_virus_IN93

TaxID: 1714273

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-110
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 32.0 3.82e-01 76.9% 68.4%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 33.0 3.30e-01 78.7% 49.1%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 46.0 3.89e-01 78.7% 77.5%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.61 55.0 4.62e-01 100.0% 98.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.61 44.0 4.02e-01 100.0% 57.9%
1u5qA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 42.0 4.44e-01 78.7% 80.2%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 41.0 4.65e-01 78.7% 92.8%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 34.0 3.25e-01 88.0% 46.6%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 47.0 4.13e-01 83.3% 77.7%
6n3oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 4.51e-01 78.7% 86.7%
3gniB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 42.0 4.55e-01 78.7% 89.9%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 43.0 4.07e-01 78.7% 87.8%
2rkuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 40.0 4.31e-01 78.7% 86.5%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 42.0 3.77e-01 75.9% 56.4%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 43.0 3.81e-01 78.7% 87.7%
2rdyA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.57 49.0 3.32e-01 93.5% 61.5%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 28.0 3.42e-01 100.0% 73.5%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 40.0 4.19e-01 77.8% 81.4%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.56 30.0 3.23e-01 78.7% 58.7%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 42.0 3.84e-01 78.7% 94.2%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.56 38.0 4.04e-01 71.3% 91.8%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 29.0 3.34e-01 77.8% 67.1%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 39.0 4.02e-01 95.4% 75.5%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.55 31.0 3.54e-01 88.0% 74.7%
3vwaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 38.0 4.08e-01 78.7% 85.6%
1pv1A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 46.0 3.40e-01 92.6% 97.9%
2y7jA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 4.41e-01 78.7% 93.3%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 37.0 4.05e-01 78.7% 84.4%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.94e-01 77.8% 78.6%
1yq2A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 49.0 3.58e-01 100.0% 86.3%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 39.0 3.65e-01 76.9% 66.4%
4c0tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 4.14e-01 78.7% 87.0%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 40.0 3.58e-01 76.9% 65.8%
3pzfA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 44.0 3.68e-01 86.1% 91.0%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 38.0 3.55e-01 76.9% 56.3%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 37.0 4.01e-01 78.7% 87.5%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 36.0 3.51e-01 91.7% 61.7%
5wnoA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 37.0 4.02e-01 78.7% 86.5%
4bwkB01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 41.0 3.15e-01 84.3% 41.1%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 39.0 3.25e-01 76.9% 91.7%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 37.0 3.22e-01 75.0% 64.4%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 39.0 3.31e-01 78.7% 94.6%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 37.0 3.42e-01 74.1% 70.7%
2e1bA02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.52 40.0 3.85e-01 85.2% 93.8%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.72e-01 90.7% 99.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 28.0 3.41e-01 91.7% 90.5%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.41e-01 80.6% 95.5%
4redB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 35.0 3.85e-01 76.9% 92.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045854 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.76 37.0 4.27e-01 78.7% 63.7%
5036065 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.75 33.0 3.98e-01 75.0% 61.3%
1678533 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.68 33.0 3.97e-01 77.8% 70.0%
3278559 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 48.0 4.12e-01 79.6% 76.5%
4160858 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.63 56.0 5.01e-01 97.2% 89.9%
3597874 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 31.0 3.45e-01 75.9% 57.8%
3230598 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.62 49.0 4.37e-01 84.3% 84.7%
4954762 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.61 49.0 4.62e-01 92.6% 71.2%
3428460 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.61 55.0 5.02e-01 100.0% 87.6%
3615631 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.60 42.0 2.92e-01 78.7% 23.3%
3911919 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.59 45.0 3.04e-01 78.7% 50.7%
3211509 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.59 51.0 4.84e-01 100.0% 78.5%
3596328 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.59 46.0 3.98e-01 83.3% 86.5%
4458125 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.59 44.0 3.07e-01 78.7% 48.0%
3601712 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 42.0 2.87e-01 78.7% 21.6%
3384789 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.59 44.0 4.43e-01 78.7% 78.2%
3951048 331.4.1.17 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › ResB 0.59 43.0 4.18e-01 91.7% 68.3%
3988719 12.3.1.21 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.58 50.0 3.81e-01 93.5% 91.6%
3232016 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 52.0 4.82e-01 100.0% 80.7%
4951174 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 39.0 2.92e-01 78.7% 26.8%
3223718 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 49.0 4.68e-01 100.0% 78.5%
3183304 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 41.0 3.72e-01 74.1% 86.2%
3378755 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 41.0 3.99e-01 75.9% 77.6%
3243158 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.57 49.0 4.61e-01 100.0% 76.3%
3719928 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 45.0 3.85e-01 88.0% 70.6%
2885396 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.56 38.0 3.76e-01 71.3% 67.5%
4083689 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.55 41.0 4.10e-01 77.8% 92.7%
3177145 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 39.0 4.02e-01 72.2% 91.0%
3213538 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 49.0 4.62e-01 99.1% 82.3%
3743698 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.55 49.0 3.47e-01 97.2% 75.7%
3601320 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 36.0 3.69e-01 99.1% 70.0%
3040855 12.3.1.21 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.55 47.0 3.68e-01 94.4% 93.3%
3590766 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 38.0 3.78e-01 70.4% 93.6%
3666722 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.55 48.0 4.43e-01 100.0% 73.8%
3717521 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.55 38.0 2.74e-01 78.7% 23.9%
3958436 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.55 41.0 3.37e-01 78.7% 44.2%
4139532 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.54 40.0 3.73e-01 76.9% 64.4%
5039634 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 30.0 3.89e-01 87.0% 92.3%
3324335 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.53 40.0 3.48e-01 79.6% 65.9%
4170447 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 41.0 2.99e-01 84.3% 33.8%
3702284 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 38.0 2.72e-01 78.7% 25.3%
4030314 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 43.0 3.49e-01 89.8% 97.2%
3194095 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 31.0 3.27e-01 75.9% 65.3%
3441915 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 37.0 2.68e-01 77.8% 25.8%
4979757 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.52 43.0 3.86e-01 92.6% 63.6%
4346250 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 44.0 4.03e-01 92.6% 77.1%
3255120 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.51 37.0 2.75e-01 77.8% 45.1%
3220389 206.1.1.72 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.51 38.0 2.77e-01 78.7% 28.8%
3592619 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 36.0 2.59e-01 77.8% 24.5%
3331084 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.50 38.0 3.75e-01 98.1% 75.7%