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AB063393.2__BAC55310.1__X__00031

Bact-Vir

AB063393.2__BAC55310.1__X__00031

Identity

Accession:
AB063393 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Helvetiavirae› Dividoviricota› Laserviricetes› Halopanivirales› Matsushitaviridae› Hukuchivirus› Thermus_virus_IN93

TaxID: 1714273

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-153
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.85 66.0 6.99e-01 100.0% 90.8%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.75 64.0 6.60e-01 100.0% 97.4%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.73 58.0 5.38e-01 83.1% 77.6%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 55.0 5.08e-01 100.0% 65.4%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 62.0 5.30e-01 100.0% 62.2%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.68 46.0 5.21e-01 100.0% 92.6%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.67 63.0 6.11e-01 100.0% 96.3%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.66 61.0 5.05e-01 100.0% 97.2%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.64 55.0 5.60e-01 100.0% 94.2%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 52.0 4.97e-01 100.0% 74.8%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 46.0 3.53e-01 74.2% 91.2%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 52.0 4.85e-01 100.0% 69.9%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 51.0 4.94e-01 100.0% 76.1%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 51.0 4.74e-01 100.0% 67.3%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 50.0 4.63e-01 100.0% 65.2%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 48.0 4.65e-01 100.0% 71.1%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 54.0 4.80e-01 99.2% 67.1%
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 51.0 4.52e-01 100.0% 62.1%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.62 57.0 5.58e-01 100.0% 94.1%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.60 42.0 3.30e-01 70.2% 91.7%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 48.0 4.28e-01 100.0% 58.9%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.58 42.0 3.27e-01 74.2% 90.3%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.58 52.0 4.23e-01 100.0% 82.6%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 52.0 4.89e-01 100.0% 81.5%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 51.0 4.75e-01 100.0% 91.0%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 51.0 4.11e-01 100.0% 83.8%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 51.0 4.68e-01 99.2% 77.5%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 40.0 3.18e-01 75.8% 86.1%
3e1eC00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 40.0 3.82e-01 75.0% 95.0%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 48.0 4.66e-01 100.0% 84.4%
1zkiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 38.0 3.84e-01 73.4% 100.0%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 4.58e-01 91.1% 96.1%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 3.73e-01 75.0% 95.8%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 46.0 3.31e-01 95.2% 95.8%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.75e-01 71.0% 100.0%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 4.42e-01 100.0% 81.8%
3bryA00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.52 47.0 3.35e-01 100.0% 92.8%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.52 47.0 3.95e-01 100.0% 67.1%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 4.24e-01 99.2% 80.6%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.52 43.0 3.47e-01 91.1% 93.3%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 4.04e-01 79.0% 92.6%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.51 46.0 3.84e-01 100.0% 66.8%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 4.02e-01 92.7% 73.3%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 42.0 3.34e-01 93.5% 90.5%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.50 44.0 3.41e-01 97.6% 97.6%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.50 43.0 3.02e-01 94.4% 45.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3065351 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.75 66.0 6.58e-01 100.0% 89.8%
3955755 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.73 67.0 5.85e-01 100.0% 95.1%
4265077 5084.1.1.34 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF2715 0.73 69.0 6.24e-01 100.0% 97.5%
4971555 9.13.1.3 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.70 55.0 5.22e-01 82.3% 81.2%
4942135 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.69 65.0 6.54e-01 100.0% 98.4%
4305692 5084.1.1.34 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF2715 0.68 62.0 5.61e-01 100.0% 95.9%
4114942 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.67 58.0 5.15e-01 100.0% 65.7%
4961667 5084.1.1.45 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 0.67 55.0 5.74e-01 100.0% 93.9%
3548672 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.66 54.0 5.00e-01 100.0% 69.0%
4445317 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.65 52.0 4.82e-01 100.0% 68.4%
3241614 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 52.0 4.97e-01 100.0% 73.8%
4403418 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.62 45.0 3.44e-01 75.0% 94.6%
3946522 9.1.1.36 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 0.62 57.0 5.29e-01 100.0% 87.1%
3237402 5084.4.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › DUF7042 0.62 53.0 5.07e-01 100.0% 79.3%
3906040 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.62 50.0 4.55e-01 100.0% 64.1%
4018306 3385.1.1.1 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › AltA1 0.61 48.0 4.51e-01 84.7% 74.8%
4184601 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.61 44.0 3.39e-01 75.0% 94.1%
4577518 9.1.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › His_binding 0.60 53.0 4.68e-01 100.0% 65.6%
3630385 9.1.1.49 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.60 50.0 5.16e-01 100.0% 95.7%
3968806 5084.5.1.68 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27733 0.59 54.0 4.56e-01 100.0% 95.2%
4610039 5084.5.4.9 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 0.56 50.0 3.74e-01 97.6% 86.7%
4451360 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 41.0 3.28e-01 75.8% 90.4%
4392904 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 41.0 3.19e-01 75.8% 87.1%
5075303 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.56 48.0 3.89e-01 100.0% 49.4%
4302710 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 40.0 3.24e-01 75.8% 92.7%
4882520 5084.1.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane 0.55 47.0 4.26e-01 96.0% 93.9%
4381862 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.55 40.0 3.17e-01 75.8% 88.1%
3965077 5084.4.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 0.54 47.0 3.79e-01 99.2% 98.5%
4560456 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.54 42.0 4.06e-01 82.3% 91.4%
42430 12.3.1.15 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › AmyA-gluTrfs_C 0.54 42.0 3.40e-01 83.9% 83.8%
4620494 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.53 39.0 3.04e-01 76.6% 87.7%
3385986 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.52 47.0 3.98e-01 96.0% 84.3%
4545116 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 40.0 3.14e-01 81.5% 92.7%
3227579 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.52 46.0 4.11e-01 98.4% 83.3%
4318843 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.52 46.0 4.41e-01 99.2% 84.1%
4100381 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.52 41.0 2.67e-01 82.3% 60.0%
3594404 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.51 45.0 3.45e-01 94.4% 78.2%
4458969 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.51 43.0 3.28e-01 94.4% 87.2%
4643038 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.50 42.0 2.77e-01 91.9% 97.5%