←Back to structures

AB366653.2__BAG41452.1__X__00007

Bact-Vir

AB366653.2__BAG41452.1__X__00007

Identity

Accession:
AB366653 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mieseafarmvirus› Ralstonia_phage_phiRSL1

TaxID: 1980924

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-162
PDB
Domain cluster: rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00038__D347-509
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h7wA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.76 65.0 6.21e-01 91.3% 94.7%
1jh6A00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.74 65.0 6.25e-01 93.2% 87.8%
2d4gA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.67 58.0 5.73e-01 91.3% 91.6%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 23.0 3.08e-01 91.3% 69.5%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 31.0 3.59e-01 92.5% 73.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 21.0 3.19e-01 83.9% 89.3%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.54 26.0 3.22e-01 91.9% 71.9%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 27.0 3.35e-01 95.0% 75.5%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 28.0 3.22e-01 80.7% 67.9%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 29.0 3.47e-01 93.8% 79.6%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 30.0 3.44e-01 93.8% 75.4%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.53 25.0 3.32e-01 93.2% 83.5%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 29.0 3.38e-01 93.8% 74.6%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 29.0 3.35e-01 92.5% 73.9%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 29.0 3.30e-01 91.9% 72.4%
5ixuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 28.0 3.38e-01 93.8% 79.4%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.52 26.0 2.86e-01 91.3% 54.5%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 25.0 3.04e-01 88.8% 69.2%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.51 36.0 4.03e-01 92.5% 96.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3730050 264.1.1.5 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest 0.75 65.0 5.75e-01 91.9% 86.0%
4937535 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.75 65.0 6.31e-01 91.9% 92.6%
4972305 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.74 66.0 6.34e-01 93.2% 92.1%
3739681 264.1.1.6 ↗ beta barrels › LigT-like › LigT-related › LigT-related › HVSL 0.74 64.0 5.91e-01 91.3% 95.5%
276 264.1.1.4 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CPDase 0.74 65.0 6.25e-01 93.2% 87.8%
2322578 264.1.1.6 ↗ beta barrels › LigT-like › LigT-related › LigT-related › HVSL 0.73 63.0 6.00e-01 91.3% 94.1%
3179394 264.1.1.6 ↗ beta barrels › LigT-like › LigT-related › LigT-related › HVSL 0.73 62.0 5.40e-01 90.7% 95.0%
4965442 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 61.0 6.19e-01 90.7% 95.6%
5058094 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.71 61.0 6.00e-01 91.3% 91.4%
4979619 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.69 56.0 5.51e-01 84.5% 90.6%
4991838 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.69 50.0 5.48e-01 75.2% 91.0%
None — 0.68 58.0 5.77e-01 91.3% 91.1%
3176561 264.1.1.10 ↗ beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.61 51.0 4.78e-01 88.8% 99.5%
5055355 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 28.0 3.51e-01 94.4% 82.2%
4218922 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.54 29.0 3.44e-01 95.7% 76.0%
3997678 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 32.0 3.77e-01 94.4% 84.5%
4318011 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 39.0 4.41e-01 91.9% 98.4%
3386672 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 30.0 3.44e-01 82.0% 74.8%
3838219 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 26.0 3.36e-01 75.2% 85.9%
3943250 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 30.0 3.39e-01 92.5% 75.7%
4336471 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 32.0 3.89e-01 91.3% 100.0%
3596126 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.51 29.0 3.34e-01 92.5% 76.5%
3238208 3016.1.1.13 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SepSecS 0.50 26.0 2.85e-01 78.9% 57.8%
3287532 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 27.0 3.24e-01 96.9% 77.0%
4470749 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.50 40.0 4.26e-01 91.9% 100.0%