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AB366653.2__BAG41505.1__X__00059

Bact-Vir

AB366653.2__BAG41505.1__X__00059

Identity

Accession:
AB366653 ↗
Kingdom:
phage

Quality

71.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mieseafarmvirus› Ralstonia_phage_phiRSL1

TaxID: 1980924

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-104
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 52.0 5.64e-01 94.9% 78.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 52.0 6.06e-01 94.9% 93.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.50e-01 96.2% 78.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 4.82e-01 98.7% 60.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 5.68e-01 96.2% 100.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 5.28e-01 94.9% 83.3%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.68 52.0 4.86e-01 93.7% 66.0%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 5.87e-01 100.0% 91.4%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 36.0 3.01e-01 93.7% 29.9%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 5.81e-01 100.0% 90.7%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 58.0 5.43e-01 100.0% 90.9%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 5.23e-01 93.7% 95.6%
2mk5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 57.0 4.80e-01 100.0% 71.0%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.62 50.0 4.17e-01 87.3% 77.2%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.62 46.0 4.34e-01 79.7% 95.9%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 54.0 4.41e-01 98.7% 63.4%
1xkgA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 52.0 3.56e-01 100.0% 69.1%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.59 40.0 3.70e-01 70.9% 88.2%
5fpwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 50.0 3.47e-01 100.0% 75.7%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 51.0 4.16e-01 100.0% 92.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.53 41.0 3.88e-01 97.5% 69.1%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.76e-01 92.4% 93.7%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 3.73e-01 98.7% 72.7%
4o2tA00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 43.0 3.47e-01 97.5% 83.9%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.50 43.0 3.21e-01 94.9% 69.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 54.0 5.55e-01 94.9% 81.1%
147797 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 54.0 5.74e-01 96.2% 88.2%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.71 53.0 4.84e-01 97.5% 61.0%
2831853 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.71 56.0 4.32e-01 94.9% 40.9%
4936914 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 51.0 4.59e-01 94.9% 57.1%
1831986 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.67 61.0 5.95e-01 100.0% 91.9%
3431172 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 60.0 4.20e-01 100.0% 91.4%
4032300 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.64 57.0 5.46e-01 98.7% 93.3%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 52.0 5.35e-01 94.9% 93.3%
4110324 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.63 51.0 5.09e-01 94.9% 87.5%
3470973 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.58 51.0 3.64e-01 100.0% 85.2%
3599398 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.56 36.0 3.33e-01 94.9% 51.0%
3392243 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.54 42.0 3.45e-01 83.5% 62.1%
3904587 11.1.1.1087 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GBD_Hemicentin 0.54 40.0 3.01e-01 81.0% 99.5%
3838661 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 3.89e-01 81.0% 75.6%
3851316 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.52 40.0 3.10e-01 82.3% 54.7%
3387865 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.71e-01 81.0% 71.6%