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AB366653.2BAG41551.1X__00107

Bact-Vir

AB366653.2__BAG41551.1__X__00107

Identity

Accession:: AB366653 ↗
Kingdom:: phage

Quality

82.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mieseafarmvirus› Ralstonia_phage_phiRSL1

TaxID: 1980924

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 175-248

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rfpA00	1.10.3420.10	Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain	0.80	57.0	4.28e-01	98.6%	32.5%
4g09A03	1.20.5.1300	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.56	29.0	3.32e-01	98.6%	67.3%
1zxeC02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.53	40.0	3.05e-01	100.0%	33.7%
1a76A01	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.53	42.0	3.19e-01	93.2%	74.9%
4l3uA00	1.20.1480.40	Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844	0.51	41.0	3.56e-01	91.9%	76.4%
2v4jC01	3.30.1420.10	Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain	0.50	27.0	3.17e-01	91.9%	89.7%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3880737	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.62	47.0	3.55e-01	82.4%	51.9%
4550154	621.1.1.3 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB	0.57	39.0	3.11e-01	73.0%	34.4%
3932176	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	41.0	2.44e-01	78.4%	29.9%
3743302	109.4.1.166 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3535	0.55	41.0	2.29e-01	82.4%	16.2%
4304175	101.1.2.88 ↗	alpha arrays › HTH › HTH › winged helix domain › Dimerisation	0.53	39.0	3.14e-01	78.4%	64.1%
3832703	2004.1.1.363 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C	0.52	42.0	2.52e-01	94.6%	24.1%
3647744	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.51	35.0	2.98e-01	70.3%	42.4%
5040756	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.51	35.0	3.25e-01	71.6%	58.9%
3612479	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	33.0	3.18e-01	97.3%	56.7%

D2 medium residues 31-81

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3227286	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.59	51.0	3.78e-01	98.0%	94.1%