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AB366653.2__BAG41697.1__X__00249

Bact-Vir

AB366653.2__BAG41697.1__X__00249

Identity

Accession:
AB366653 ↗
Kingdom:
phage

Quality

59.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mieseafarmvirus› Ralstonia_phage_phiRSL1

TaxID: 1980924

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-83
PDB
Domain cluster: rep: KY499642.1__AQT28023.1__pVa21_082__00082__D3-66
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.76 47.0 5.72e-01 80.0% 100.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 6.02e-01 91.3% 100.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.35e-01 87.5% 83.3%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 41.0 5.16e-01 78.8% 97.9%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 5.21e-01 77.5% 96.2%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 49.0 5.52e-01 82.5% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.56e-01 83.7% 93.9%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.66 51.0 5.27e-01 81.2% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.66 53.0 5.39e-01 92.5% 89.6%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.65 43.0 4.08e-01 88.7% 57.4%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 53.0 5.22e-01 88.7% 84.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 5.06e-01 76.2% 93.5%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 44.0 4.09e-01 88.7% 57.7%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 40.0 4.40e-01 70.0% 78.8%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 39.0 3.82e-01 85.0% 56.7%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 50.0 5.08e-01 85.0% 97.5%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.62 38.0 3.95e-01 85.0% 64.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.61 45.0 4.96e-01 78.8% 98.4%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 50.0 4.24e-01 88.7% 65.2%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 46.0 4.23e-01 87.5% 66.3%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 42.0 4.24e-01 85.0% 75.6%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 46.0 4.48e-01 87.5% 97.8%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 40.0 2.56e-01 75.0% 93.0%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.56 38.0 3.82e-01 70.0% 96.3%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.56 37.0 2.71e-01 70.0% 88.1%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 38.0 2.73e-01 72.5% 86.7%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 45.0 4.19e-01 88.7% 94.0%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 44.0 4.31e-01 87.5% 98.9%
2yrlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.87e-01 75.0% 91.6%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 34.0 3.79e-01 71.2% 92.9%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.53 37.0 3.33e-01 73.8% 92.0%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.82e-01 82.5% 100.0%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 37.0 2.99e-01 75.0% 85.4%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.51 42.0 4.24e-01 88.7% 90.0%
4m00A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.54e-01 75.0% 88.4%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 57.0 6.74e-01 87.5% 100.0%
3991073 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 45.0 5.35e-01 70.0% 87.3%
2464247 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.75 46.0 5.07e-01 70.0% 75.8%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.75 53.0 5.88e-01 83.7% 92.2%
3703749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 48.0 5.30e-01 78.8% 83.1%
3694693 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.73 47.0 5.15e-01 70.0% 80.0%
4519674 4.1.1.186 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5397 0.73 51.0 5.78e-01 83.7% 100.0%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.72 51.0 5.27e-01 86.3% 78.7%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.45e-01 95.0% 85.7%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.70 50.0 4.85e-01 95.0% 66.7%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.74e-01 85.0% 96.9%
3846130 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.70 56.0 4.10e-01 91.3% 33.7%
3853598 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.69 56.0 5.67e-01 91.3% 86.3%
3902990 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.69 56.0 5.40e-01 91.3% 76.7%
3931055 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.68 56.0 5.79e-01 88.7% 94.7%
3754343 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.67 55.0 5.73e-01 91.3% 94.7%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.66 53.0 5.49e-01 85.0% 93.3%
3382832 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.66 54.0 4.12e-01 87.5% 96.1%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.65 53.0 5.18e-01 92.5% 81.2%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.65 54.0 5.58e-01 88.7% 96.0%
4026033 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.65 47.0 4.18e-01 87.5% 54.5%
4549698 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.65 51.0 4.87e-01 86.3% 71.6%
1516038 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.65 43.0 4.08e-01 88.7% 57.4%
4965721 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.64e-01 88.7% 95.7%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.08e-01 93.8% 80.0%
3652661 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.64 52.0 4.37e-01 87.5% 93.8%
4258307 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 51.0 3.47e-01 87.5% 32.5%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 52.0 5.28e-01 88.7% 97.5%
3181439 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.68e-01 88.7% 92.6%
4029263 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 53.0 4.62e-01 92.5% 69.2%
3581968 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.17e-01 87.5% 83.3%
3679362 4.1.1.351 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.62 45.0 4.47e-01 76.2% 100.0%
3597364 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 3.26e-01 87.5% 22.7%
3928760 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 49.0 3.19e-01 86.3% 24.4%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 51.0 4.83e-01 90.0% 83.2%
3982999 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.61 53.0 4.88e-01 93.8% 88.0%
3504246 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.61 54.0 4.38e-01 98.8% 88.4%
3360171 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 51.0 4.29e-01 92.5% 60.1%
5008884 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.61 39.0 3.86e-01 88.7% 61.2%
3234035 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.60 52.0 4.56e-01 95.0% 79.2%
4025294 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.60 51.0 4.94e-01 92.5% 88.9%
3782292 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.60 48.0 4.80e-01 85.0% 93.8%
3185323 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.60 51.0 4.57e-01 93.8% 76.4%
4405852 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.72e-01 86.3% 97.6%
3636251 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.59 53.0 4.61e-01 97.5% 80.8%
3593976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 4.39e-01 96.2% 64.6%
3218646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.49e-01 77.5% 90.8%
1175108 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.57 51.0 4.58e-01 98.8% 71.4%
3628582 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 47.0 4.11e-01 87.5% 82.6%
3260528 2485.1.1.35 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.56 38.0 3.44e-01 70.0% 75.5%
3700677 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 45.0 4.09e-01 87.5% 86.7%
3279525 295.1.1.25 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF397 0.55 36.0 3.84e-01 73.8% 77.9%
None — 0.55 49.0 3.21e-01 100.0% 60.9%
4948817 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.54 44.0 2.82e-01 87.5% 24.3%
3744748 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 43.0 4.07e-01 86.3% 91.6%
3716605 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 37.0 3.04e-01 75.0% 42.5%
4525954 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 43.0 3.98e-01 88.7% 94.0%
5061340 11.1.1.237 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.51 38.0 4.02e-01 78.8% 98.6%
3272021 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.51 40.0 3.24e-01 88.7% 73.7%
3744332 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.51 40.0 3.17e-01 88.7% 74.9%
4341478 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.50 37.0 3.69e-01 77.5% 89.4%
3661144 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.50 40.0 2.69e-01 88.7% 80.0%
D2 high residues 144-271
PDB
Domain cluster: rep: JQ768459.1__AFH14668.1__Lu11_0134__00137__D19-142