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AB366653.2__BAG41712.1__X__00265

Bact-Vir

AB366653.2__BAG41712.1__X__00265

Identity

Accession:
AB366653 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mieseafarmvirus› Ralstonia_phage_phiRSL1

TaxID: 1980924

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-126
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00278__D3-89
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dyjA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 37.0 4.22e-01 91.9% 97.8%
1d0nA03 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 40.0 4.12e-01 95.2% 82.6%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 36.0 4.10e-01 93.5% 100.0%
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.53 41.0 4.38e-01 89.5% 98.1%
4ekfA00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.53 46.0 3.98e-01 96.0% 80.7%
1uwdA00 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.53 37.0 3.98e-01 72.6% 90.2%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.52 36.0 3.87e-01 94.4% 83.3%
4jj9C00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 37.0 3.56e-01 73.4% 93.8%
1ynfA00 3.75.10.20 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › Succinylarginine dihydrolase 0.52 44.0 3.11e-01 96.0% 57.3%
4dh4A00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.50 38.0 3.94e-01 79.8% 96.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081028 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.58 37.0 4.20e-01 79.8% 86.7%
4977425 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.55 38.0 4.27e-01 89.5% 96.7%
5056791 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 33.0 3.90e-01 96.8% 92.5%
3387460 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 30.0 3.14e-01 87.9% 58.3%
5077596 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 34.0 3.86e-01 98.4% 87.8%
3635663 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.53 45.0 3.62e-01 96.0% 75.0%
3802532 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 43.0 3.61e-01 91.1% 82.3%
3959452 327.5.1.6 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-dom_DIP2-like 0.51 42.0 4.14e-01 89.5% 84.6%
3445126 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.51 42.0 3.62e-01 91.1% 90.7%
3244391 315.1.1.1 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF 0.51 38.0 3.90e-01 79.8% 88.3%
3475197 323.1.1.31 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-dom_DIP2-like 0.50 42.0 3.17e-01 92.7% 47.7%
4943924 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.50 34.0 3.89e-01 93.5% 100.0%