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AB366653.2__BAG41753.1__X__00307

Bact-Vir

AB366653.2__BAG41753.1__X__00307

Identity

Accession:
AB366653 ↗
Kingdom:
phage

Quality

69.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mieseafarmvirus› Ralstonia_phage_phiRSL1

TaxID: 1980924

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-92
PDB
Domain cluster: rep: KC699836.1__AGK86939.1__SIOphi_00655__00131__D62-131
CATH (81)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.78 53.0 4.53e-01 70.8% 65.5%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.78 53.0 4.81e-01 70.8% 56.2%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.76 51.0 5.09e-01 70.8% 66.7%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.76 54.0 5.14e-01 75.0% 63.5%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.75 52.0 3.69e-01 72.2% 26.9%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 56.0 4.46e-01 80.6% 82.0%
2uuvB01 3.40.462.40 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix 0.74 58.0 3.84e-01 83.3% 75.3%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 51.0 4.75e-01 73.6% 61.8%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 48.0 4.79e-01 73.6% 66.2%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.72 50.0 3.71e-01 72.2% 32.0%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.72 61.0 5.76e-01 100.0% 77.5%
4qjvB00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.71 55.0 5.02e-01 90.3% 62.8%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 47.0 4.34e-01 73.6% 53.3%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.69 55.0 4.78e-01 100.0% 56.8%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.69 60.0 5.46e-01 100.0% 81.8%
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.69 47.0 4.55e-01 72.2% 63.9%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.68 47.0 4.15e-01 72.2% 77.6%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.68 59.0 5.41e-01 100.0% 84.8%
3lpmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 57.0 4.11e-01 100.0% 31.6%
3kp0A03 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.68 46.0 4.81e-01 70.8% 80.6%
1m0sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 45.0 4.58e-01 76.4% 69.4%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.67 46.0 3.59e-01 72.2% 34.5%
3l7oA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 48.0 4.85e-01 76.4% 75.0%
2yx1A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 53.0 4.08e-01 95.8% 36.1%
7wm5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 55.0 4.03e-01 97.2% 32.4%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.66 51.0 5.23e-01 100.0% 87.1%
1i9gA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 54.0 4.10e-01 100.0% 36.4%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.66 58.0 5.32e-01 100.0% 76.3%
3cedA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 46.0 4.17e-01 73.6% 57.1%
1w1oA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.66 46.0 3.23e-01 73.6% 35.5%
2ozvA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 52.0 3.92e-01 100.0% 33.3%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.65 57.0 5.48e-01 100.0% 90.6%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 57.0 5.13e-01 100.0% 95.1%
4bluB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 55.0 3.76e-01 98.6% 27.2%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.64 51.0 4.17e-01 86.1% 59.8%
2fmaA00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.64 44.0 4.71e-01 72.2% 98.3%
5wt3A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 51.0 3.90e-01 94.4% 36.5%
5hfjC00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 54.0 4.01e-01 100.0% 37.7%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.63 54.0 3.81e-01 94.4% 39.0%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 56.0 5.15e-01 100.0% 88.4%
3c6kB03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 54.0 4.06e-01 100.0% 38.5%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.63 54.0 5.12e-01 100.0% 85.6%
1rjjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 44.0 3.85e-01 75.0% 57.7%
2anrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.62 44.0 4.26e-01 73.6% 71.2%
3jwhA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 55.0 4.08e-01 100.0% 45.0%
1zo0A00 3.40.630.60 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.61 52.0 4.42e-01 100.0% 56.3%
4ft4A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 54.0 3.45e-01 100.0% 22.0%
1xdzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 49.0 3.49e-01 100.0% 27.7%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 50.0 3.67e-01 95.8% 31.7%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.61 53.0 3.97e-01 98.6% 59.2%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 43.0 3.68e-01 73.6% 91.2%
4dj3B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 42.0 3.64e-01 73.6% 91.0%
2c7rA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 51.0 3.78e-01 100.0% 38.9%
3tebB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.60 49.0 3.52e-01 100.0% 33.7%
3a7eA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.67e-01 100.0% 34.0%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 48.0 3.81e-01 100.0% 41.3%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 41.0 3.85e-01 73.6% 60.0%
1nbeB01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.58 39.0 3.63e-01 72.2% 53.8%
1sz7A00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.58 51.0 3.99e-01 100.0% 73.0%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.36e-01 100.0% 67.3%
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 50.0 4.21e-01 97.2% 59.2%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 49.0 3.33e-01 100.0% 30.7%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 48.0 3.65e-01 100.0% 43.0%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.57 47.0 3.36e-01 98.6% 29.2%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.56 48.0 4.24e-01 98.6% 81.4%
1kwmA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.56 42.0 3.96e-01 87.5% 65.9%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.28e-01 100.0% 68.3%
6blkC00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 43.0 3.43e-01 87.5% 92.4%
3gygC02 3.30.70.1410 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › yhjk (haloacid dehalogenase-like hydrolase protein) domain 0.55 48.0 4.64e-01 98.6% 86.3%
1dt4A00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 38.0 3.81e-01 72.2% 83.6%
2w40A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.25e-01 98.6% 38.5%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.54 39.0 3.68e-01 76.4% 85.6%
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 44.0 3.55e-01 100.0% 42.5%
3g8wB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 44.0 3.58e-01 100.0% 43.3%
3qv2A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 45.0 3.41e-01 98.6% 46.0%
6fdfA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.38e-01 100.0% 47.2%
2bg9C01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.53 46.0 3.37e-01 100.0% 72.7%
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 38.0 3.09e-01 77.8% 66.2%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.52 36.0 3.54e-01 73.6% 67.9%
3rpfA00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.52 42.0 3.36e-01 90.3% 66.9%
1q2lA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 37.0 2.70e-01 80.6% 60.2%
ECOD (90)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947208 304.134.1.2 ↗ a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › ArgZ-like_C_1st 0.78 54.0 5.36e-01 72.2% 73.3%
4662593 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.77 55.0 4.95e-01 73.6% 58.9%
138988 304.134.1.1 ↗ a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N 0.77 53.0 4.82e-01 72.2% 56.7%
4999750 304.43.1.0 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 0.76 52.0 4.73e-01 73.6% 54.3%
4991846 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.76 52.0 3.87e-01 70.8% 32.0%
4475311 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.76 53.0 5.05e-01 73.6% 62.4%
4062444 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.74 51.0 4.81e-01 72.2% 60.0%
4946385 2004.1.3.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.74 51.0 3.64e-01 70.8% 28.0%
5068735 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.74 50.0 3.55e-01 70.8% 26.2%
5022418 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.74 49.0 5.11e-01 73.6% 75.4%
5025783 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.74 52.0 4.92e-01 73.6% 62.4%
210670 2.1.1.95 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Lig_C 0.73 55.0 4.52e-01 80.6% 86.3%
4518565 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.73 51.0 4.69e-01 73.6% 58.9%
5072098 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.73 51.0 3.64e-01 72.2% 28.6%
3992039 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.72 58.0 5.35e-01 100.0% 68.1%
3387300 304.52.1.1 ↗ a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 0.72 53.0 5.14e-01 79.2% 70.0%
5045726 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.72 49.0 4.75e-01 72.2% 63.7%
1481299 304.5.1.4 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CdAMP_rec 0.72 47.0 4.00e-01 72.2% 42.5%
168067 2.1.1.95 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Lig_C 0.72 55.0 4.38e-01 81.9% 81.4%
3591554 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 64.0 6.31e-01 100.0% 94.7%
3505041 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.70 49.0 4.26e-01 73.6% 57.3%
3970675 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 48.0 3.58e-01 72.2% 35.0%
5023724 2.1.1.95 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Lig_C 0.70 51.0 4.21e-01 79.2% 86.7%
4638999 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.70 47.0 4.56e-01 76.4% 62.5%
4615209 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.69 48.0 4.37e-01 72.2% 57.9%
4411012 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.68 52.0 3.87e-01 81.9% 33.1%
3512301 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 61.0 4.00e-01 100.0% 24.4%
1824495 2484.1.1.61 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 0.68 48.0 3.57e-01 73.6% 35.4%
3671807 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.68 53.0 5.16e-01 95.8% 78.8%
3286721 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.67 58.0 4.03e-01 100.0% 28.6%
4504275 325.1.1.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like 0.67 44.0 4.29e-01 73.6% 60.0%
None — 0.67 60.0 5.37e-01 98.6% 80.0%
4483977 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.67 46.0 4.18e-01 72.2% 55.0%
3701239 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.67 57.0 5.60e-01 100.0% 91.3%
4547137 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.67 46.0 4.37e-01 72.2% 64.7%
3385565 320.1.1.16 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › HP0268 0.66 59.0 5.82e-01 98.6% 100.0%
4151399 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.66 46.0 4.45e-01 72.2% 67.5%
3272812 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.66 56.0 4.15e-01 100.0% 36.8%
3590219 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.65 44.0 4.15e-01 76.4% 56.7%
4958905 241.5.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA › DUF1529 0.65 52.0 4.42e-01 87.5% 69.7%
3253912 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.65 54.0 4.02e-01 98.6% 35.3%
3443064 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.65 55.0 4.78e-01 100.0% 60.0%
4420565 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.65 55.0 4.00e-01 100.0% 32.1%
5015467 304.18.1.0 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.65 45.0 4.36e-01 72.2% 66.3%
3108806 304.54.1.1 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC 0.65 45.0 4.19e-01 72.2% 58.2%
4001476 2003.1.5.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.65 55.0 4.10e-01 100.0% 35.5%
3719199 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.65 53.0 3.43e-01 100.0% 18.1%
3602282 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.64 44.0 4.32e-01 72.2% 66.3%
4167818 2003.1.5.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 0.64 55.0 3.68e-01 100.0% 24.3%
3743748 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.71e-01 100.0% 68.9%
5278 304.13.1.1 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein VC0424 › Hypothetical protein VC0424 › RraB 0.64 51.0 4.17e-01 86.1% 59.8%
3387365 872.8.1.0 ↗ a+b two layers › Dodecin subunit-like › Probable RNA-binding protein N-terminal domain › Probable RNA-binding protein N-terminal domain 0.64 44.0 4.63e-01 73.6% 83.1%
3838404 872.1.1.0 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.64 43.0 4.69e-01 70.8% 98.2%
3652417 2003.1.5.115 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.63 55.0 4.45e-01 100.0% 49.7%
136754 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.63 56.0 4.13e-01 100.0% 46.1%
3995832 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.63 54.0 4.11e-01 100.0% 38.9%
4464568 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 56.0 5.06e-01 100.0% 81.0%
4570129 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.63 52.0 4.00e-01 97.2% 40.0%
4964267 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.63 46.0 4.00e-01 79.2% 67.8%
2159717 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.63 54.0 4.07e-01 100.0% 38.7%
4954449 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.62 55.0 4.93e-01 97.2% 83.8%
3663444 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 46.0 3.84e-01 77.8% 47.2%
3292011 2003.1.5.154 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 0.62 51.0 3.18e-01 100.0% 14.5%
4978302 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 55.0 4.33e-01 100.0% 64.7%
5028136 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.61 55.0 4.72e-01 100.0% 77.4%
5070158 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.61 45.0 2.91e-01 79.2% 22.6%
3257389 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.60 52.0 3.63e-01 100.0% 40.2%
3429092 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.60 51.0 3.61e-01 100.0% 28.6%
4998393 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 54.0 4.70e-01 100.0% 76.4%
5069807 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.59 51.0 3.93e-01 100.0% 68.6%
3972904 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.59 52.0 4.69e-01 100.0% 76.0%
5030783 242.1.1.3 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end 0.59 52.0 4.76e-01 100.0% 87.4%
3218711 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.59 49.0 4.35e-01 100.0% 63.8%
3603235 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.58 50.0 4.49e-01 97.2% 69.0%
3500318 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.58 41.0 3.45e-01 76.4% 43.1%
3685451 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 39.0 3.21e-01 72.2% 61.4%
3520384 213.1.1.6 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.57 48.0 4.39e-01 100.0% 69.5%
3996241 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.56 39.0 3.18e-01 73.6% 70.0%
5033882 304.3.1.11 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE 0.56 51.0 4.42e-01 100.0% 72.2%
4971745 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.56 49.0 4.08e-01 100.0% 89.8%
4252267 213.1.1.7 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB 0.56 47.0 3.62e-01 100.0% 41.1%
4768813 331.10.1.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.55 45.0 3.33e-01 95.8% 33.6%
3559665 213.1.1.6 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.54 45.0 3.83e-01 100.0% 54.6%
3915011 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.53 47.0 3.65e-01 98.6% 61.9%
1712534 7587.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P 0.53 43.0 4.08e-01 95.8% 75.3%
4198253 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.53 41.0 3.18e-01 86.1% 92.0%
3173026 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.53 44.0 3.48e-01 100.0% 61.7%
3340064 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.53 44.0 3.95e-01 100.0% 67.3%
5072186 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 44.0 3.97e-01 100.0% 71.4%
3276105 912.1.1.0 ↗ few secondary structure elements › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain 0.50 41.0 3.76e-01 90.3% 82.1%