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AB366653.2__BAG41763.1__X__00316

Bact-Vir

AB366653.2__BAG41763.1__X__00316

Identity

Accession:
AB366653 ↗
Kingdom:
phage

Quality

66.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mieseafarmvirus› Ralstonia_phage_phiRSL1

TaxID: 1980924

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-46
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 57.0 4.79e-01 86.1% 82.8%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 52.0 4.08e-01 83.3% 92.2%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.69 48.0 3.18e-01 72.2% 25.5%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 51.0 4.37e-01 86.1% 78.5%
2dbsA00 3.40.1350.20 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 53.0 4.28e-01 100.0% 85.0%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 3.38e-01 91.7% 80.9%
3dalA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.60 44.0 2.97e-01 88.9% 40.2%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.60 42.0 3.15e-01 72.2% 83.2%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 3.22e-01 83.3% 85.3%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 3.35e-01 91.7% 85.0%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.04e-01 88.9% 77.9%
3e59B02 3.30.60.140 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 37.0 3.75e-01 72.2% 100.0%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 40.0 2.83e-01 88.9% 77.9%
1a8lA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 37.0 2.95e-01 100.0% 30.2%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 2.99e-01 88.9% 82.7%
1euhA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 38.0 2.37e-01 86.1% 77.4%
4khbD02 2.30.29.220 Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) 0.52 40.0 3.17e-01 88.9% 48.1%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.52 39.0 3.71e-01 100.0% 73.6%
3vwaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 2.98e-01 83.3% 91.1%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.26e-01 91.7% 84.0%
4ciuA04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 35.0 2.82e-01 80.6% 34.4%
5xe7A02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.13e-01 100.0% 89.0%
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.50 35.0 3.10e-01 91.7% 46.7%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3239333 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 59.0 5.09e-01 88.9% 80.0%
4579534 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.72 56.0 4.74e-01 91.7% 83.1%
4059146 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.71 56.0 4.71e-01 91.7% 84.6%
4434149 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.70 55.0 4.69e-01 91.7% 80.0%
4100221 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.70 54.0 4.54e-01 88.9% 83.1%
4176687 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.70 55.0 4.59e-01 88.9% 81.5%
3838464 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.70 55.0 4.64e-01 91.7% 84.6%
4167626 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.69 54.0 4.58e-01 91.7% 80.0%
4678731 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.69 53.0 4.52e-01 88.9% 83.1%
4039724 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.69 54.0 4.58e-01 91.7% 80.0%
4038661 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.69 52.0 4.46e-01 88.9% 83.1%
4124811 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.69 53.0 4.47e-01 88.9% 83.1%
4502430 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.68 48.0 3.40e-01 75.0% 89.5%
3711293 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 48.0 4.22e-01 97.2% 56.9%
4580548 109.4.1.211 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19,TPR_20 0.59 40.0 2.57e-01 88.9% 12.1%
4966249 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 43.0 4.17e-01 91.7% 77.8%
4126271 387.1.1.42 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Toxin_34 0.57 41.0 3.74e-01 83.3% 80.0%
11439 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.56 43.0 3.63e-01 80.6% 53.2%
5071954 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.56 44.0 3.97e-01 100.0% 83.3%
4967269 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.55 41.0 3.81e-01 91.7% 63.6%
5001967 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 42.0 3.93e-01 88.9% 68.0%
4936825 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 45.0 4.21e-01 100.0% 82.0%
5031005 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 40.0 3.69e-01 88.9% 65.5%
3351715 2485.1.1.31 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Redoxin 0.54 41.0 3.50e-01 100.0% 57.7%
5055480 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.18e-01 80.6% 62.7%
5001623 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 39.0 3.71e-01 88.9% 68.0%
4992345 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.53 36.0 3.58e-01 83.3% 68.9%
5031215 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.53 36.0 3.48e-01 88.9% 61.8%
5031362 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 37.0 3.43e-01 88.9% 56.7%
4967853 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 37.0 3.46e-01 83.3% 76.4%
5079669 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 36.0 3.53e-01 100.0% 67.3%
4992628 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 37.0 3.56e-01 100.0% 72.7%
5031928 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 41.0 3.70e-01 91.7% 63.6%
4967881 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 36.0 3.42e-01 86.1% 59.3%
3984485 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 43.0 3.46e-01 100.0% 50.0%
5030593 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 41.0 3.77e-01 97.2% 87.3%
5012674 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 36.0 3.23e-01 91.7% 50.0%
3947665 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.51 39.0 2.87e-01 97.2% 32.1%
4982519 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 40.0 3.75e-01 100.0% 72.0%
5030546 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 40.0 3.65e-01 97.2% 94.5%
5074248 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 35.0 3.36e-01 88.9% 61.8%
4941025 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.50 37.0 3.53e-01 86.1% 63.3%
5079277 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.50 39.0 3.56e-01 100.0% 82.8%
4966339 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.50 35.0 3.22e-01 86.1% 53.3%