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AB605730.1__BAK52982.1__X__00170

Bact-Vir

AB605730.1__BAK52982.1__X__00170

Identity

Accession:
AB605730 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.89 57.0 4.89e-01 100.0% 44.7%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 55.0 6.41e-01 100.0% 89.5%
2q1kA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.85 55.0 6.72e-01 94.9% 100.0%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.85 50.0 5.30e-01 100.0% 66.2%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 56.0 6.64e-01 93.6% 100.0%
4hteA02 1.20.58.1740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 60.0 5.10e-01 100.0% 52.1%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.79 55.0 4.46e-01 100.0% 40.4%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.78 56.0 4.90e-01 100.0% 51.8%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.76 55.0 4.69e-01 100.0% 49.6%
3vkgB06 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.75 59.0 4.03e-01 100.0% 26.1%
2oyhA00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 44.0 4.81e-01 100.0% 71.9%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.74 58.0 5.56e-01 100.0% 72.7%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.73 51.0 4.66e-01 100.0% 55.3%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 55.0 5.52e-01 100.0% 79.5%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.71 51.0 4.47e-01 96.2% 51.3%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 53.0 5.44e-01 93.6% 81.1%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 48.0 4.55e-01 100.0% 60.2%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.67 60.0 4.72e-01 100.0% 50.3%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.67 59.0 4.49e-01 98.7% 95.1%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.66 58.0 5.09e-01 100.0% 66.4%
3c1yA02 1.20.1260.110 Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region 0.66 54.0 4.32e-01 96.2% 45.9%
1rfyB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.66 54.0 5.19e-01 96.2% 78.4%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.65 59.0 5.24e-01 100.0% 70.1%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 50.0 5.28e-01 100.0% 95.5%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 60.0 5.41e-01 100.0% 77.0%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 43.0 4.07e-01 96.2% 57.3%
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.63 45.0 3.84e-01 96.2% 47.9%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 52.0 5.21e-01 94.9% 92.7%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.62 57.0 5.30e-01 100.0% 99.0%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 47.0 4.80e-01 100.0% 85.1%
2g8lA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.62 36.0 3.89e-01 84.6% 67.7%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 55.0 5.52e-01 100.0% 94.9%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 53.0 4.84e-01 100.0% 72.8%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 49.0 4.99e-01 100.0% 96.0%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.60 56.0 5.04e-01 100.0% 76.2%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 55.0 4.71e-01 100.0% 67.2%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.59 44.0 4.06e-01 89.7% 62.9%
1tk5A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.58 42.0 3.93e-01 76.9% 90.9%
2vs0A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 53.0 5.27e-01 100.0% 95.1%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 43.0 4.57e-01 96.2% 100.0%
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.58 53.0 3.77e-01 100.0% 36.4%
4i0xH00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 48.0 4.86e-01 100.0% 98.7%
2yevB01 1.10.287.90 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 50.0 4.71e-01 100.0% 86.0%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.56 48.0 4.25e-01 100.0% 72.3%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.55 48.0 4.38e-01 100.0% 71.7%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 38.0 3.87e-01 71.8% 84.2%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 45.0 4.70e-01 94.9% 100.0%
3l8nA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.54 26.0 2.63e-01 92.3% 40.8%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.53 43.0 4.24e-01 96.2% 83.7%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.53 31.0 3.08e-01 97.4% 51.9%
6mgiA03 1.20.1440.90 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Phosphoenolpyruvate/pyruvate domain 0.53 50.0 4.02e-01 100.0% 56.9%
1gs0A01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.53 45.0 3.82e-01 94.9% 96.9%
4hhyC01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.52 45.0 3.86e-01 98.7% 80.2%
1nu7D01 1.20.120.750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle domain 1 0.52 46.0 3.84e-01 100.0% 68.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3378683 1075.4.1.30 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran 0.77 57.0 3.37e-01 100.0% 12.0%
4431938 507.1.1.7 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › PF30523 0.73 65.0 4.68e-01 100.0% 36.1%
3724169 4992.1.1.10 extended segments › RelB-like › RelB-like › RelB-like › DUF6594 0.73 63.0 5.97e-01 100.0% 78.9%
4489485 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.71 58.0 4.22e-01 100.0% 34.4%
3615878 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.71 50.0 4.67e-01 100.0% 60.0%
3294780 3755.3.1.375 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF4079 0.68 55.0 4.39e-01 100.0% 44.7%
3255143 630.1.1.0 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain 0.67 61.0 4.45e-01 100.0% 40.5%
4927671 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 63.0 4.35e-01 100.0% 65.3%
5079569 605.6.1.0 alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.66 60.0 5.82e-01 97.4% 97.6%
3635258 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.66 53.0 4.67e-01 100.0% 59.1%
3456539 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.66 61.0 5.45e-01 100.0% 99.0%
4045490 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.66 61.0 5.69e-01 100.0% 89.5%
4019360 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 50.0 3.98e-01 100.0% 40.6%
3926959 605.6.1.0 alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.65 61.0 5.89e-01 100.0% 90.6%
5082442 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 59.0 4.84e-01 100.0% 57.7%
3689543 3922.1.1.227 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF6594 0.64 59.0 5.78e-01 100.0% 100.0%
5064040 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 60.0 4.27e-01 100.0% 88.8%
3185576 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 61.0 4.47e-01 100.0% 43.3%
3992534 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.64 59.0 3.87e-01 100.0% 26.3%
3235302 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 60.0 4.03e-01 100.0% 45.5%
3264568 3748.1.1.3 extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C 0.63 59.0 5.26e-01 100.0% 93.3%
3221921 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.62 60.0 5.40e-01 100.0% 78.0%
3581368 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 56.0 4.50e-01 100.0% 60.7%
3589719 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 58.0 4.21e-01 100.0% 43.6%
3253767 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 58.0 4.50e-01 100.0% 61.3%
3920552 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 58.0 4.10e-01 100.0% 89.5%
3631951 3755.3.1.355 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uds1 0.61 52.0 4.21e-01 100.0% 50.7%
5036014 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.61 49.0 4.64e-01 100.0% 71.6%
5081618 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.61 49.0 4.30e-01 100.0% 57.5%
3475698 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 57.0 4.48e-01 100.0% 52.0%
4145392 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.61 52.0 3.81e-01 96.2% 34.9%
3594019 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.60 56.0 3.80e-01 100.0% 47.9%
3260564 626.1.1.1 alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 0.60 53.0 3.37e-01 98.7% 38.9%
3287601 150.5.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.60 55.0 5.18e-01 100.0% 83.0%
4963649 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.59 53.0 3.54e-01 100.0% 52.1%
3703032 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 54.0 4.55e-01 100.0% 66.4%
3205695 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 50.0 3.50e-01 100.0% 29.6%
3424354 226.1.1.20 a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 0.58 54.0 3.98e-01 100.0% 41.1%
3391384 5030.1.1.0 extended segments › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL 0.58 54.0 5.25e-01 100.0% 100.0%
3237896 192.8.1.450 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › GPHR_N 0.58 54.0 3.88e-01 100.0% 50.7%
4030172 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 50.0 3.44e-01 100.0% 47.7%
3696269 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.58 48.0 4.00e-01 100.0% 50.3%
3613914 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.58 49.0 4.97e-01 100.0% 97.3%
3729479 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 3.89e-01 97.4% 45.5%
3804219 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 50.0 4.78e-01 100.0% 87.8%
3923659 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.56 42.0 3.91e-01 94.9% 64.2%
3408277 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 49.0 4.36e-01 100.0% 68.7%
4561800 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 47.0 3.98e-01 96.2% 56.9%
4094625 3660.1.1.1 alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › SecG 0.55 48.0 4.88e-01 96.2% 100.0%
5019253 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 48.0 3.14e-01 100.0% 75.6%
4155643 3788.1.1.12 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › CCD48 0.54 34.0 3.61e-01 87.2% 71.4%
4851526 609.1.1.1 alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg 0.54 47.0 3.84e-01 98.7% 75.5%
3610819 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.52 42.0 3.28e-01 100.0% 37.4%
3703206 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.52 46.0 3.73e-01 98.7% 52.4%
3333338 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.52 45.0 3.81e-01 100.0% 59.4%
3594068 3959.1.1.0 alpha duplicates or obligate multimers › Protein Hikeshi dimerization domain › Protein Hikeshi dimerization domain › Protein Hikeshi dimerization domain 0.51 42.0 4.18e-01 93.6% 88.7%