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AB605730.1__BAK53023.1__X__00211

Bact-Vir

AB605730.1__BAK53023.1__X__00211

Identity

Accession:
AB605730 ↗
Kingdom:
phage

Quality

70.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bacillus_phage_SP-10

TaxID: 941058

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-96
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.95 53.0 5.92e-01 81.9% 69.7%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.88 54.0 6.10e-01 87.2% 79.5%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.87 49.0 4.15e-01 80.9% 36.8%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.81 59.0 6.02e-01 100.0% 78.0%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.79 55.0 5.10e-01 87.2% 58.8%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.78 50.0 4.49e-01 87.2% 48.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.74 44.0 4.87e-01 96.8% 74.3%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.72 53.0 5.44e-01 87.2% 79.8%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.71 44.0 4.63e-01 92.6% 67.8%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 49.0 5.85e-01 78.7% 100.0%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 54.0 5.22e-01 87.2% 72.8%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 55.0 5.21e-01 87.2% 71.6%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 54.0 5.17e-01 87.2% 73.6%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 46.0 4.80e-01 95.7% 76.7%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 53.0 5.64e-01 89.4% 97.5%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.67 44.0 4.95e-01 87.2% 90.1%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 53.0 5.32e-01 81.9% 92.6%
3llwD00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.66 49.0 3.42e-01 95.7% 25.3%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.66 45.0 5.17e-01 77.7% 90.4%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 45.0 4.48e-01 88.3% 66.7%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.66 50.0 5.00e-01 87.2% 76.5%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.66 54.0 4.07e-01 89.4% 40.0%
5y06A01 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 55.0 3.99e-01 87.2% 41.9%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.65 51.0 4.04e-01 85.1% 87.4%
3spcA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 51.0 4.64e-01 85.1% 91.3%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 54.0 4.68e-01 87.2% 75.9%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.63 51.0 4.61e-01 87.2% 82.0%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 43.0 4.51e-01 88.3% 79.1%
3k29A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 47.0 3.85e-01 87.2% 46.0%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 34.0 3.43e-01 78.7% 52.6%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 49.0 4.59e-01 100.0% 72.1%
1n1fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 54.0 4.57e-01 100.0% 69.9%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 47.0 3.44e-01 87.2% 33.9%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 47.0 4.53e-01 100.0% 75.5%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 47.0 4.31e-01 95.7% 68.0%
2o8bB03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.54 45.0 3.61e-01 95.7% 45.2%
3sfvB01 3.30.450.390 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 44.0 3.85e-01 87.2% 97.2%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.52 36.0 3.67e-01 70.2% 87.6%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 3.78e-01 98.9% 71.4%
1v64A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 46.0 4.37e-01 97.9% 87.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3506950 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 56.0 5.79e-01 100.0% 78.9%
3516641 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 57.0 4.58e-01 85.1% 45.6%
3425962 603.1.1.116 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27980 0.75 52.0 5.49e-01 98.9% 80.0%
3247392 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.74 62.0 5.17e-01 87.2% 100.0%
3926959 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.72 53.0 5.63e-01 76.6% 97.6%
3917315 3937.1.1.1 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin 0.71 57.0 4.33e-01 86.2% 98.1%
5078448 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 56.0 5.29e-01 87.2% 70.9%
4181293 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 55.0 5.21e-01 87.2% 70.9%
3487911 3954.1.1.0 ↗ alpha arrays › Phosphodiesterase 4 upstream conserved regions (UCR) › Phosphodiesterase 4 upstream conserved regions (UCR) › Phosphodiesterase 4 upstream conserved regions (UCR) 0.68 42.0 2.82e-01 89.4% 17.8%
4630084 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.68 46.0 4.72e-01 87.2% 72.2%
3704047 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 52.0 3.24e-01 87.2% 16.0%
3485296 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 54.0 5.18e-01 87.2% 74.3%
3595979 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.67 51.0 5.17e-01 87.2% 78.9%
5000789 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 56.0 5.36e-01 87.2% 77.1%
4028685 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 53.0 5.01e-01 87.2% 70.9%
4283629 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 56.0 4.92e-01 87.2% 89.2%
3595104 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.66 54.0 3.52e-01 85.1% 23.2%
3236856 174.1.1.50 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7807 0.66 53.0 4.36e-01 88.3% 83.4%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 55.0 5.02e-01 87.2% 74.2%
4025655 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 53.0 5.34e-01 87.2% 83.2%
4998773 3755.3.1.305 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.66 55.0 4.19e-01 87.2% 52.8%
4661346 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 55.0 4.64e-01 87.2% 70.3%
3691694 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 55.0 4.93e-01 87.2% 68.0%
3781291 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 55.0 5.42e-01 87.2% 82.0%
4458171 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 55.0 4.84e-01 87.2% 76.9%
3168929 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.65 44.0 3.62e-01 88.3% 37.1%
4271212 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 55.0 4.94e-01 87.2% 86.2%
5081054 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.65 54.0 4.40e-01 86.2% 90.0%
3785619 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 55.0 5.05e-01 87.2% 82.6%
4662222 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 58.0 5.23e-01 92.6% 76.7%
3703582 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.64 54.0 4.79e-01 87.2% 65.6%
3878898 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 47.0 3.58e-01 77.7% 94.4%
3775175 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.63 50.0 4.90e-01 81.9% 78.0%
1779564 604.32.1.1 ↗ alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY › UvsY 0.63 51.0 4.47e-01 85.1% 64.0%
3717072 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.63 53.0 4.47e-01 87.2% 56.6%
3550987 4207.1.1.1 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med21 0.63 51.0 4.47e-01 87.2% 59.3%
3500290 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.63 51.0 5.51e-01 87.2% 100.0%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 55.0 5.16e-01 92.6% 83.6%
4030041 4207.1.1.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) 0.62 52.0 4.57e-01 87.2% 63.8%
3211404 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.62 50.0 3.62e-01 88.3% 59.6%
4929483 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 51.0 4.66e-01 87.2% 85.0%
3812118 4207.1.1.1 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med21 0.61 51.0 4.47e-01 88.3% 63.0%
3893988 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.61 54.0 3.29e-01 94.7% 76.8%
3793578 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 55.0 5.23e-01 100.0% 88.2%
3775068 604.1.1.24 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4456 0.59 55.0 4.10e-01 100.0% 65.5%
3779522 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.59 47.0 4.44e-01 95.7% 70.4%
3506312 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 49.0 4.24e-01 87.2% 66.7%
3600342 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.58 52.0 3.88e-01 100.0% 89.6%
4526296 3755.3.1.588 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Med14 0.56 45.0 4.00e-01 86.2% 60.8%
3886137 605.6.1.6 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › zf-CCCH_10 0.55 39.0 4.43e-01 74.5% 100.0%
5083373 4038.1.1.0 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.53 44.0 3.15e-01 92.6% 31.9%
3499150 3954.1.1.1 ↗ alpha arrays › Phosphodiesterase 4 upstream conserved regions (UCR) › Phosphodiesterase 4 upstream conserved regions (UCR) › Phosphodiesterase 4 upstream conserved regions (UCR) › PDE4_UCR 0.53 41.0 3.73e-01 83.0% 68.0%
3198044 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.52 42.0 4.19e-01 95.7% 87.4%
4994291 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.51 41.0 3.15e-01 86.2% 54.0%
4618205 604.1.1.150 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.51 45.0 4.21e-01 100.0% 81.7%
4946547 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 39.0 3.67e-01 83.0% 70.0%