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AB605730.1__BAK53039.1__X__00227

Bact-Vir

AB605730.1__BAK53039.1__X__00227

Identity

Accession:
AB605730 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2diuA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.76 56.0 5.23e-01 100.0% 63.0%
1jg5A00 3.30.1410.10 Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP 0.71 62.0 5.54e-01 98.3% 100.0%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.71 46.0 3.26e-01 100.0% 22.1%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.69 53.0 4.90e-01 100.0% 64.5%
2cxaA01 3.30.70.3550 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Leucyl/phenylalanyl-tRNA-protein transferase, N-terminal domain 0.69 44.0 4.42e-01 100.0% 63.3%
4xpkA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 43.0 3.31e-01 100.0% 27.0%
1b7yB01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.67 48.0 4.61e-01 94.8% 64.3%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.67 47.0 4.54e-01 100.0% 65.2%
3g87A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.67 46.0 4.41e-01 100.0% 62.7%
6g80B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 50.0 3.37e-01 100.0% 21.7%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.66 57.0 4.02e-01 100.0% 30.5%
1avaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 41.0 4.11e-01 100.0% 62.1%
2d9iA00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.65 48.0 4.16e-01 98.3% 50.0%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.65 57.0 4.00e-01 100.0% 31.4%
3l09A03 3.30.70.2670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 37.0 4.02e-01 94.8% 74.5%
3p04A00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.61 44.0 4.11e-01 100.0% 61.0%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.60 43.0 3.46e-01 100.0% 36.6%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.59 43.0 3.19e-01 100.0% 29.3%
2mkhA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 39.0 3.39e-01 70.7% 73.2%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 51.0 3.62e-01 100.0% 39.1%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 44.0 4.15e-01 98.3% 70.7%
1rq8A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.56 49.0 4.19e-01 100.0% 81.2%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.56 45.0 4.15e-01 100.0% 67.5%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 43.0 3.86e-01 100.0% 60.2%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.84e-01 86.2% 68.8%
4ofzA03 3.30.70.3080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 46.0 4.11e-01 100.0% 96.6%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 39.0 3.17e-01 81.0% 66.4%
3ssmC02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 45.0 3.17e-01 100.0% 30.3%
3euhD01 1.10.10.2250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 40.0 3.87e-01 98.3% 68.6%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.54 47.0 3.79e-01 100.0% 71.3%
3vgpA00 3.40.50.12610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 46.0 3.36e-01 100.0% 48.5%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.25e-01 98.3% 46.1%
2zaiA01 3.40.50.12610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 46.0 3.43e-01 100.0% 87.1%
1bbyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.49e-01 96.6% 63.8%
1p9oA00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.52 42.0 2.84e-01 96.6% 93.3%
4bndA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.52 43.0 3.77e-01 100.0% 100.0%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 44.0 3.72e-01 100.0% 100.0%
2o0bA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.51 38.0 2.66e-01 98.3% 21.4%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 45.0 3.79e-01 100.0% 100.0%
3r4cA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 45.0 3.75e-01 100.0% 100.0%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.44e-01 94.8% 54.2%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 2.88e-01 94.8% 32.9%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 3.48e-01 98.3% 59.5%
3l7yA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.50 42.0 3.54e-01 100.0% 99.1%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.39e-01 98.3% 56.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4969028 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.88 59.0 4.08e-01 100.0% 23.5%
3600286 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.80 56.0 5.15e-01 100.0% 57.3%
3226058 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.78 57.0 5.20e-01 100.0% 60.0%
3774427 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.78 54.0 4.59e-01 100.0% 45.3%
4985396 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.77 45.0 3.74e-01 100.0% 34.0%
3710762 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.77 53.0 4.88e-01 98.3% 56.0%
4947879 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.77 59.0 5.56e-01 100.0% 68.6%
4046651 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 56.0 5.30e-01 100.0% 65.7%
3822370 304.163.1.2 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › ACT_13 0.75 51.0 4.44e-01 100.0% 46.7%
5065806 304.8.1.7 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C 0.73 49.0 4.69e-01 100.0% 58.6%
4934922 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 55.0 5.12e-01 100.0% 64.0%
4004341 101.1.2.775 alpha arrays › HTH › HTH › winged helix domain › SieB 0.73 46.0 4.04e-01 100.0% 44.7%
3277566 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 51.0 4.74e-01 100.0% 58.7%
4975299 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 55.0 5.10e-01 100.0% 65.3%
4945293 101.1.9.153 alpha arrays › HTH › HTH › Putative DNA-binding domain › tRNA_synthFbeta 0.71 54.0 4.77e-01 100.0% 56.5%
4626742 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 54.0 4.96e-01 100.0% 64.0%
3509233 304.120.1.12 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF26955 0.71 56.0 5.02e-01 100.0% 62.5%
5060154 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 53.0 5.05e-01 100.0% 68.6%
4932335 101.1.9.20 alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.71 53.0 5.05e-01 100.0% 68.6%
3279474 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.70 44.0 3.50e-01 100.0% 32.2%
4949131 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.70 48.0 3.45e-01 100.0% 24.3%
3761464 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.70 62.0 3.40e-01 100.0% 6.3%
3809682 2003.1.5.154 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 0.69 57.0 3.55e-01 100.0% 16.6%
3479364 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.69 49.0 4.42e-01 98.3% 55.0%
4974442 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.69 50.0 4.59e-01 100.0% 60.0%
4523487 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.68 49.0 4.78e-01 98.3% 69.2%
3273918 304.9.1.84 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 0.68 47.0 4.59e-01 98.3% 66.2%
5047775 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.68 50.0 4.48e-01 100.0% 55.3%
5000514 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.67 50.0 4.43e-01 100.0% 54.5%
5027485 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.67 46.0 4.57e-01 100.0% 70.0%
3260643 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.66 48.0 4.38e-01 100.0% 57.5%
3837787 2003.1.5.154 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 0.66 58.0 3.65e-01 100.0% 18.7%
3917175 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.66 49.0 4.07e-01 100.0% 43.4%
4983980 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.66 47.0 4.48e-01 100.0% 64.3%
3404730 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.66 60.0 3.83e-01 100.0% 74.0%
3412297 2002.1.1.260 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › R1_ABCA1 0.65 56.0 4.43e-01 100.0% 57.3%
5001624 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.64 48.0 4.46e-01 100.0% 64.0%
4937464 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 46.0 4.35e-01 100.0% 64.0%
3646093 2003.1.5.154 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 0.62 54.0 3.69e-01 100.0% 26.4%
3269719 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.62 48.0 4.01e-01 100.0% 47.6%
3402464 304.56.1.10 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › R1_ABCA1 0.61 48.0 3.89e-01 100.0% 44.3%
4941095 3110.1.1.18 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › PF29470 0.61 46.0 3.65e-01 100.0% 41.2%
3905833 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.60 53.0 4.54e-01 100.0% 61.1%
3822416 101.1.2.7 alpha arrays › HTH › HTH › winged helix domain › HSF_DNA-bind 0.60 48.0 4.04e-01 98.3% 50.5%
3602646 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 40.0 4.22e-01 100.0% 80.0%
5040496 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.59 41.0 3.81e-01 100.0% 53.8%
3993298 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.59 44.0 4.11e-01 100.0% 62.5%
4979937 328.3.1.0 a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain 0.57 50.0 4.63e-01 100.0% 98.7%
3585190 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.57 41.0 2.44e-01 100.0% 7.8%
4952082 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.57 46.0 3.60e-01 100.0% 41.1%
3913065 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.55 43.0 3.38e-01 87.9% 69.6%
3613455 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 45.0 3.59e-01 100.0% 54.7%
5056132 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.55 46.0 3.62e-01 100.0% 42.9%
5046545 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.14e-01 82.8% 74.3%
3598488 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.54 45.0 3.43e-01 100.0% 63.9%
5011621 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.58e-01 94.8% 60.0%
None 0.53 43.0 3.17e-01 94.8% 41.1%
3521988 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.41e-01 100.0% 53.3%
4996461 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.52 43.0 3.41e-01 96.6% 54.6%
4980926 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.36e-01 96.6% 48.6%
3840019 2484.1.1.261 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27038 0.52 42.0 3.24e-01 96.6% 92.7%
None 0.51 40.0 3.36e-01 100.0% 49.5%
3912868 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.51 41.0 3.37e-01 100.0% 58.5%
4444948 101.1.2.44 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.51 38.0 3.56e-01 98.3% 62.5%
5036806 3352.1.1.1 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 0.50 44.0 2.55e-01 100.0% 21.7%
4987623 3374.1.1.0 a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain 0.50 44.0 3.03e-01 100.0% 29.2%
4951141 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 37.0 3.48e-01 96.6% 62.5%
4997333 101.1.2.44 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.50 37.0 3.49e-01 98.3% 65.3%