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AB711120.1__BAM99101.1__X__00021

Bact-Vir

AB711120.1__BAM99101.1__X__00021

Identity

Accession:
AB711120 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-72
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.70 45.0 5.12e-01 92.9% 92.0%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 55.0 4.99e-01 95.7% 64.5%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 49.0 4.75e-01 95.7% 69.2%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.67 55.0 4.92e-01 90.0% 64.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 55.0 4.17e-01 91.4% 95.2%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 45.0 4.02e-01 100.0% 49.0%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.66 43.0 3.30e-01 97.1% 30.9%
3r8qA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 50.0 4.60e-01 95.7% 64.1%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 44.0 4.13e-01 71.4% 94.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 53.0 4.83e-01 91.4% 98.9%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.63 52.0 3.99e-01 90.0% 78.5%
2pn5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 45.0 4.12e-01 91.4% 57.6%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 34.0 3.40e-01 100.0% 49.3%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.62 50.0 4.43e-01 95.7% 59.4%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.62 44.0 4.58e-01 75.7% 93.8%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 44.0 3.92e-01 75.7% 60.2%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 50.0 4.57e-01 91.4% 96.8%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 53.0 4.17e-01 100.0% 77.0%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 50.0 4.98e-01 100.0% 87.7%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 32.0 3.64e-01 100.0% 69.4%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 45.0 3.97e-01 82.9% 70.6%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 3.94e-01 74.3% 68.6%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.35e-01 88.6% 78.4%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 4.19e-01 95.7% 68.7%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 51.0 3.62e-01 100.0% 85.0%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 48.0 4.33e-01 91.4% 72.9%
3og4B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.45e-01 100.0% 68.9%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.57 40.0 3.31e-01 74.3% 65.2%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.34e-01 91.4% 81.8%
2qsqB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.26e-01 95.7% 71.3%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.57 40.0 4.16e-01 80.0% 78.8%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.57 46.0 4.10e-01 91.4% 63.8%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.00e-01 94.3% 59.3%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 3.60e-01 90.0% 77.9%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.55 47.0 3.86e-01 97.1% 71.3%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.54 42.0 3.88e-01 87.1% 72.6%
5wkfD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.98e-01 95.7% 71.3%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 40.0 3.28e-01 88.6% 42.0%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.53 42.0 3.33e-01 94.3% 64.0%
4faoC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 44.0 4.30e-01 90.0% 96.0%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.76e-01 98.6% 98.5%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.52 45.0 3.84e-01 98.6% 82.1%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 44.0 3.80e-01 95.7% 75.0%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.51 34.0 3.18e-01 72.9% 54.4%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.51 37.0 3.02e-01 78.6% 79.0%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 39.0 3.32e-01 87.1% 96.8%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 42.0 2.79e-01 100.0% 58.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015845 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.78 40.0 2.94e-01 100.0% 20.6%
3614316 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.75 65.0 4.71e-01 94.3% 52.4%
3468906 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 44.0 4.17e-01 100.0% 52.9%
3658595 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.69 44.0 4.44e-01 100.0% 64.3%
3267963 11.1.1.1309 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28707 0.68 56.0 5.12e-01 97.1% 68.1%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 47.0 4.99e-01 72.9% 96.6%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 46.0 5.07e-01 71.4% 98.2%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.67 42.0 4.99e-01 78.6% 100.0%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 46.0 4.92e-01 74.3% 96.7%
4018051 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.66 58.0 4.60e-01 97.1% 71.4%
3879743 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 52.0 5.15e-01 95.7% 80.0%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.66 58.0 5.68e-01 100.0% 92.0%
4197404 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 59.0 4.69e-01 100.0% 82.9%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 47.0 4.76e-01 77.1% 85.7%
3972650 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 54.0 4.63e-01 90.0% 100.0%
3932246 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 55.0 4.63e-01 92.9% 67.0%
3892042 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.64 46.0 4.34e-01 81.4% 62.4%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 46.0 4.56e-01 77.1% 80.0%
4946900 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 53.0 4.64e-01 91.4% 61.0%
3768152 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 49.0 5.29e-01 91.4% 98.3%
5060839 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 50.0 4.57e-01 95.7% 66.3%
4389388 848.1.1.1 a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.61 56.0 3.80e-01 100.0% 39.2%
3180103 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 41.0 2.38e-01 92.9% 8.7%
3964696 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.45e-01 95.7% 65.0%
4425795 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.60 32.0 3.29e-01 100.0% 50.8%
1069248 3612.1.1.1 a+b two layers › Pesticin N-terminal domain › Pesticin N-terminal domain › Pesticin N-terminal domain › Pesticin_RB 0.60 50.0 3.81e-01 100.0% 39.2%
3878707 11.1.1.21 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tissue_fac 0.60 51.0 4.55e-01 95.7% 67.0%
3707452 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.60 52.0 4.10e-01 100.0% 75.2%
3849404 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.59 50.0 4.00e-01 91.4% 56.3%
4031235 3986.2.1.2 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › DUF2922 0.59 49.0 4.93e-01 90.0% 100.0%
3546263 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.59 50.0 4.15e-01 91.4% 64.2%
3740491 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.59 51.0 4.21e-01 100.0% 77.8%
3611560 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 48.0 3.98e-01 90.0% 81.6%
3684553 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 50.0 3.76e-01 98.6% 68.9%
3991280 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.59 49.0 4.11e-01 91.4% 57.5%
3622516 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 51.0 4.48e-01 100.0% 73.4%
3626068 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 32.0 3.46e-01 100.0% 60.0%
3870519 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.58 51.0 4.38e-01 95.7% 68.2%
3795541 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.42e-01 100.0% 73.4%
3927982 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.31e-01 90.0% 67.4%
3940319 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 41.0 2.67e-01 75.7% 24.1%
3802001 207.1.1.174 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3 0.57 50.0 3.04e-01 100.0% 14.4%
3940450 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 39.0 4.19e-01 80.0% 83.1%
5047887 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.57 46.0 3.31e-01 88.6% 87.1%
3589473 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 34.0 3.32e-01 100.0% 51.2%
3499411 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 50.0 2.99e-01 100.0% 93.6%
3705856 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.56 47.0 3.13e-01 94.3% 43.0%
3928430 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.56 33.0 3.35e-01 100.0% 55.7%
4995764 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.56 47.0 3.30e-01 94.3% 88.5%
4965849 3435.1.1.9 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 0.56 44.0 3.05e-01 88.6% 33.3%
3926118 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.56 33.0 3.47e-01 100.0% 65.0%
3898134 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 45.0 4.43e-01 98.6% 84.0%
3362139 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.55 46.0 3.11e-01 92.9% 59.5%
3692094 11.1.1.60 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 0.54 44.0 3.36e-01 91.4% 66.3%
3448847 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.54 48.0 3.22e-01 100.0% 31.3%
3581172 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 43.0 2.81e-01 98.6% 21.1%
4141811 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.53 46.0 2.86e-01 94.3% 26.5%
5036063 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.53 45.0 3.38e-01 95.7% 46.7%
5078481 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.52 43.0 2.97e-01 91.4% 80.8%
4060677 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 40.0 3.77e-01 98.6% 67.8%
5038450 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.51 41.0 2.84e-01 91.4% 36.7%
4423403 330.1.1.14 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.51 46.0 3.62e-01 100.0% 55.9%
4378664 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 47.0 3.13e-01 100.0% 34.6%
4159881 220.1.1.197 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.50 44.0 3.98e-01 100.0% 70.5%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.50 37.0 3.63e-01 80.0% 100.0%