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AB711120.1__BAM99127.1__X__00047

Bact-Vir

AB711120.1__BAM99127.1__X__00047

Identity

Accession:
AB711120 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1auvA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 51.0 4.39e-01 84.6% 90.5%
5uayA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.65 57.0 5.34e-01 100.0% 85.4%
2r01A02 2.20.180.10 Mainly Beta › Single Sheet › putative fmn-dependent nitroreductase like fold › putative fmn-dependent nitroreductase like domains 0.65 31.0 3.70e-01 98.5% 66.7%
3q6bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.64 55.0 5.34e-01 100.0% 94.6%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 54.0 4.58e-01 100.0% 81.7%
4k3bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.63 54.0 5.08e-01 100.0% 92.9%
5efrA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.63 54.0 5.09e-01 100.0% 100.0%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 53.0 4.24e-01 100.0% 67.4%
3itwA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 40.0 4.18e-01 83.1% 76.8%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.61 48.0 3.79e-01 87.7% 40.6%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 52.0 4.87e-01 100.0% 95.2%
2pw9C02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 46.0 4.81e-01 100.0% 98.3%
2x8xX02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 52.0 5.00e-01 100.0% 94.7%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 51.0 4.01e-01 100.0% 53.9%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 50.0 4.77e-01 100.0% 97.6%
2pbeA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 44.0 3.58e-01 80.0% 42.2%
1n6zA00 3.10.20.250 Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like 0.60 52.0 4.50e-01 100.0% 77.1%
4nfwF00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 52.0 4.00e-01 100.0% 53.6%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 37.0 3.20e-01 80.0% 37.6%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 51.0 3.99e-01 100.0% 62.8%
4pavB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 46.0 3.75e-01 87.7% 83.2%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 45.0 3.02e-01 89.2% 60.1%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 50.0 4.74e-01 100.0% 97.4%
2kjzA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 36.0 3.85e-01 75.4% 74.1%
3vb0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 43.0 3.29e-01 87.7% 33.8%
1d2oA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.57 51.0 4.80e-01 100.0% 96.2%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 47.0 4.69e-01 98.5% 97.1%
2i5tA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.56 48.0 3.64e-01 100.0% 65.7%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 40.0 2.78e-01 75.4% 89.5%
3ct8A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 41.0 3.41e-01 86.2% 83.5%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 36.0 3.06e-01 78.5% 37.6%
3bt3A02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 36.0 3.72e-01 80.0% 77.2%
4abyD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.48e-01 73.8% 28.0%
5c5zA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.54 46.0 3.82e-01 100.0% 78.7%
4rt5A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 39.0 3.40e-01 76.9% 95.0%
3e66A01 3.30.420.230 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region 0.54 43.0 3.32e-01 90.8% 69.6%
2vh2B01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 45.0 4.40e-01 100.0% 93.1%
4jtmA00 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.54 42.0 3.92e-01 100.0% 69.1%
4p02B02 3.30.379.20 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › 0.53 35.0 2.94e-01 86.2% 36.1%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 40.0 3.21e-01 84.6% 38.2%
2ot9A01 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.53 45.0 3.39e-01 100.0% 83.5%
2xtlA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.53 46.0 4.04e-01 100.0% 88.9%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 2.99e-01 72.3% 58.9%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 40.0 3.36e-01 86.2% 80.8%
3r7wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.27e-01 96.9% 90.7%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.79e-01 90.8% 40.6%
1zswA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 39.0 3.09e-01 84.6% 37.3%
4ol9A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 2.87e-01 81.5% 91.2%
2g3wA00 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.50 42.0 3.20e-01 100.0% 83.2%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.44e-01 87.7% 62.1%
4cz2B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 3.13e-01 96.9% 91.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3617305 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 58.0 5.29e-01 98.5% 97.8%
4602886 221.3.1.0 a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.66 57.0 5.60e-01 100.0% 90.0%
5020150 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.66 50.0 4.63e-01 100.0% 63.5%
4952589 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.66 51.0 5.26e-01 100.0% 91.7%
3936154 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 57.0 5.13e-01 100.0% 87.8%
4258146 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.64 55.0 5.21e-01 100.0% 93.8%
5015864 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.64 48.0 4.49e-01 100.0% 64.7%
4957877 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 54.0 5.32e-01 96.9% 98.6%
4948522 3715.1.1.1 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.63 55.0 5.01e-01 98.5% 96.6%
3388254 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.63 55.0 5.31e-01 100.0% 92.0%
3528684 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 53.0 4.81e-01 100.0% 93.7%
3785086 870.1.1.1 a+b two layers › Hypothetical protein Yml108w › Hypothetical protein Yml108w › Hypothetical protein Yml108w › DUF1892 0.63 55.0 5.08e-01 100.0% 77.6%
4954187 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.62 47.0 4.86e-01 100.0% 93.3%
4037465 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.62 50.0 5.09e-01 100.0% 93.7%
3246059 221.1.1.8 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd 0.62 51.0 3.99e-01 100.0% 53.9%
3296275 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.62 53.0 4.91e-01 100.0% 90.6%
3689050 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 52.0 4.83e-01 100.0% 90.6%
3707943 221.1.1.46 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.61 51.0 4.43e-01 100.0% 76.4%
4145433 2008.1.1.67 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.60 43.0 2.86e-01 76.9% 21.7%
1032929 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.60 46.0 4.27e-01 100.0% 63.3%
5066657 810.1.1.2 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.60 51.0 4.09e-01 100.0% 75.0%
4016613 221.3.1.0 a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.60 50.0 4.71e-01 100.0% 75.9%
4051173 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.60 44.0 2.74e-01 80.0% 50.7%
3579527 221.1.1.25 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › APG12 0.59 51.0 4.44e-01 100.0% 78.1%
4138932 304.48.1.72 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_N 0.59 47.0 3.14e-01 90.8% 41.0%
3425922 3121.1.1.8 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA1_3_Toc75 0.59 50.0 4.60e-01 100.0% 90.0%
4049316 7529.1.1.3 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N 0.59 43.0 3.31e-01 80.0% 83.1%
3806927 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.58 50.0 4.45e-01 100.0% 66.3%
3432937 3121.1.1.8 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA1_3_Toc75 0.58 49.0 4.60e-01 100.0% 95.3%
4234006 3121.1.1.2 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 0.58 49.0 4.57e-01 100.0% 81.2%
4937870 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.58 49.0 4.43e-01 100.0% 97.9%
3451965 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.58 46.0 4.37e-01 100.0% 72.5%
4024185 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.57 46.0 4.65e-01 100.0% 95.4%
3842874 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.56 47.0 4.14e-01 100.0% 89.5%
3972352 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 43.0 2.82e-01 87.7% 89.1%
4159886 3541.1.1.1 beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 0.55 46.0 3.76e-01 100.0% 71.7%
3302509 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 36.0 4.06e-01 100.0% 88.0%
3753927 389.1.1.131 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ASTN_1_2_N 0.54 43.0 3.21e-01 100.0% 33.7%
4559006 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.54 45.0 4.45e-01 100.0% 95.7%
4983137 882.1.1.4 a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.53 38.0 3.09e-01 93.8% 37.0%
2756142 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 32.0 3.44e-01 75.4% 70.4%
4187303 7529.1.1.3 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N 0.53 39.0 3.05e-01 83.1% 81.8%
3494888 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 43.0 3.01e-01 92.3% 73.0%
3706436 2004.1.1.119 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.52 42.0 3.04e-01 92.3% 82.9%
4534207 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.52 41.0 2.92e-01 87.7% 81.0%
4056101 810.1.1.2 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.52 42.0 3.76e-01 98.5% 73.3%
4962540 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 38.0 3.66e-01 83.1% 83.3%
3525352 2004.1.1.119 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.51 44.0 3.10e-01 100.0% 86.7%
3172926 2004.1.1.54 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.51 39.0 2.57e-01 89.2% 39.2%
5050209 2004.1.1.119 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.51 44.0 3.14e-01 100.0% 80.0%
4011536 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 3.16e-01 98.5% 90.0%
3400943 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.51 41.0 2.69e-01 100.0% 20.7%