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AB711120.1__BAM99140.1__X__00060
Bact-VirAB711120.1__BAM99140.1__X__00060
Identity
- Accession:
- AB711120 ↗
- Kingdom:
- phage
Quality
67.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 123-198
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.73 | 54.0 | 3.84e-01 | 77.6% | 71.4% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.72 | 52.0 | 3.62e-01 | 81.6% | 23.8% |
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 48.0 | 4.77e-01 | 73.7% | 72.8% |
| 1yz6A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.67 | 53.0 | 5.08e-01 | 85.5% | 82.8% |
| 1v92A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 38.0 | 4.60e-01 | 82.9% | 100.0% |
| 3da1A03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.62 | 45.0 | 3.68e-01 | 82.9% | 42.6% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 44.0 | 4.27e-01 | 75.0% | 84.7% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 43.0 | 3.94e-01 | 98.7% | 55.3% |
| 3w6bB00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.60 | 40.0 | 3.15e-01 | 81.6% | 34.0% |
| 2a6hF01 | 1.20.120.1810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 48.0 | 3.81e-01 | 96.1% | 46.4% |
| 2rrdA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.59 | 45.0 | 4.10e-01 | 81.6% | 69.3% |
| 3urrA00 | 3.40.930.10 | Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A | 0.59 | 41.0 | 3.30e-01 | 72.4% | 58.6% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 48.0 | 4.18e-01 | 86.8% | 83.0% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.58 | 46.0 | 3.49e-01 | 86.8% | 49.5% |
| 4fb2A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 50.0 | 3.18e-01 | 97.4% | 44.4% |
| 1nxuA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.55 | 42.0 | 4.23e-01 | 82.9% | 79.7% |
| 1xrhD01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.54 | 40.0 | 3.66e-01 | 78.9% | 60.2% |
| 1z2iA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.54 | 41.0 | 3.86e-01 | 82.9% | 67.7% |
| 1vbiA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.54 | 41.0 | 3.73e-01 | 82.9% | 61.2% |
| 3dplC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 48.0 | 4.67e-01 | 97.4% | 98.8% |
| 2dg8D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.34e-01 | 93.4% | 77.5% |
| 1jkwA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 40.0 | 3.69e-01 | 85.5% | 74.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3514804 | 3722.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain | 0.72 | 56.0 | 3.84e-01 | 81.6% | 26.2% |
| 5066877 | 3633.1.1.4 ↗ | alpha duplicates or obligate multimers › Haptoglobin-hemoglobin receptor › Haptoglobin-hemoglobin receptor › Haptoglobin-hemoglobin receptor › DUF1512 | 0.72 | 54.0 | 4.06e-01 | 80.3% | 85.4% |
| 354272 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.70 | 48.0 | 4.44e-01 | 90.8% | 56.2% |
| 4207710 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.68 | 45.0 | 5.01e-01 | 75.0% | 91.4% |
| 4946961 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.67 | 53.0 | 5.04e-01 | 85.5% | 81.1% |
| 5066085 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.67 | 53.0 | 4.94e-01 | 85.5% | 68.4% |
| 4111221 | 3413.1.1.1 ↗ | alpha bundles › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › IpgD | 0.65 | 45.0 | 4.16e-01 | 72.4% | 98.0% |
| 3460838 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.63 | 46.0 | 3.04e-01 | 76.3% | 32.8% |
| 5057376 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.62 | 48.0 | 4.67e-01 | 82.9% | 77.6% |
| 3395749 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.62 | 45.0 | 3.67e-01 | 75.0% | 47.4% |
| 3984430 | 2007.2.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase › IpgD | 0.62 | 47.0 | 2.88e-01 | 81.6% | 14.6% |
| 4248743 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.62 | 42.0 | 4.37e-01 | 71.1% | 81.4% |
| 3397047 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 49.0 | 4.01e-01 | 84.2% | 92.8% |
| 3723178 | 192.8.1.35 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF6594 | 0.59 | 44.0 | 4.18e-01 | 78.9% | 68.9% |
| 4016838 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.57 | 49.0 | 2.90e-01 | 96.1% | 26.0% |
| 3374812 | 150.1.1.124 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › THU_Piezo1 | 0.57 | 39.0 | 3.20e-01 | 71.1% | 48.5% |
| 4158713 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.55 | 47.0 | 3.91e-01 | 93.4% | 83.1% |
| 4490066 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.51 | 38.0 | 3.65e-01 | 81.6% | 67.8% |
| 3387001 | 4953.1.1.2 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C | 0.51 | 36.0 | 3.42e-01 | 75.0% | 89.5% |
| 3702650 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.51 | 45.0 | 4.17e-01 | 97.4% | 88.3% |