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AB767244.1__BAM68868.1__X__00047

Bact-Vir

AB767244.1__BAM68868.1__X__00047

Identity

Accession:
AB767244 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yokohamavirus› Edwardsiella_phage_MSW-3

TaxID: 1264700

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-75
PDB
Domain cluster: rep: MN850570.1__QHR65403.1__mellemsur_2__00002__D3-74
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 54.0 5.90e-01 98.6% 98.2%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 57.0 5.24e-01 98.6% 66.3%
2creA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 57.0 5.78e-01 100.0% 85.9%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 53.0 5.88e-01 97.2% 98.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 5.65e-01 100.0% 85.7%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 54.0 5.74e-01 100.0% 92.2%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 5.36e-01 98.6% 76.9%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 50.0 5.60e-01 95.8% 100.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 53.0 5.68e-01 100.0% 96.7%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 51.0 5.35e-01 98.6% 87.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 52.0 5.56e-01 98.6% 98.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 53.0 5.38e-01 100.0% 85.7%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 51.0 5.56e-01 97.2% 100.0%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 55.0 5.64e-01 97.2% 94.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 54.0 5.60e-01 98.6% 93.9%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 50.0 4.74e-01 97.2% 66.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 51.0 5.57e-01 98.6% 100.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 53.0 5.11e-01 98.6% 75.3%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.67e-01 100.0% 98.4%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.64e-01 97.2% 78.3%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.62e-01 100.0% 98.4%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 4.42e-01 100.0% 51.3%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 5.45e-01 98.6% 96.8%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.60e-01 98.6% 98.4%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 52.0 5.50e-01 100.0% 100.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 5.33e-01 98.6% 96.7%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 5.11e-01 98.6% 81.6%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 53.0 5.26e-01 100.0% 86.8%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 4.93e-01 97.2% 90.6%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.38e-01 100.0% 90.5%
3vygD00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 4.66e-01 97.2% 73.1%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.15e-01 98.6% 60.2%
6biqC01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 41.0 3.47e-01 100.0% 42.1%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 42.0 4.37e-01 83.3% 80.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 41.0 4.42e-01 100.0% 88.3%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.81e-01 98.6% 89.2%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 52.0 4.63e-01 100.0% 76.9%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 5.07e-01 98.6% 97.3%
2b5uA03 3.10.380.10 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain 0.58 34.0 3.11e-01 91.7% 41.8%
7r3mA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.61e-01 100.0% 86.6%
1qdlB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 45.0 3.36e-01 91.7% 67.2%
4o06A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 43.0 3.95e-01 100.0% 86.3%
4v3lC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 34.0 3.54e-01 95.8% 75.4%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
157818 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 58.0 5.37e-01 100.0% 67.0%
3503780 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 54.0 5.62e-01 100.0% 89.2%
3737825 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 51.0 5.65e-01 94.4% 98.2%
3261986 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 53.0 5.78e-01 100.0% 98.3%
3928262 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.76e-01 97.2% 98.3%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 52.0 5.62e-01 98.6% 96.7%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 50.0 5.51e-01 95.8% 100.0%
3633434 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 53.0 5.36e-01 98.6% 84.3%
3234947 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 53.0 5.53e-01 100.0% 92.3%
3479350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 51.0 4.88e-01 98.6% 68.2%
3214234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.55e-01 98.6% 98.3%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.68 52.0 3.66e-01 100.0% 26.8%
3222195 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 52.0 5.44e-01 98.6% 92.3%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.48e-01 100.0% 95.4%
3575243 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 49.0 5.31e-01 95.8% 96.6%
3591824 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 53.0 5.38e-01 100.0% 88.6%
3783847 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 53.0 5.52e-01 100.0% 95.4%
3698582 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 53.0 5.36e-01 100.0% 88.6%
3931417 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 51.0 5.45e-01 97.2% 100.0%
3475756 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 52.0 5.15e-01 100.0% 82.7%
4999430 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.64 47.0 3.99e-01 79.2% 75.8%
4952498 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 44.0 3.95e-01 73.6% 98.0%
3938415 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 51.0 5.38e-01 100.0% 100.0%
509 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 55.0 5.27e-01 98.6% 86.7%
3514043 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 47.0 4.66e-01 100.0% 80.0%
3482677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.69e-01 100.0% 85.7%
3879216 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 5.18e-01 94.4% 90.7%
3585452 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.59 51.0 5.24e-01 100.0% 98.6%
3665882 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 49.0 3.98e-01 100.0% 48.9%
3460948 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.57 39.0 3.63e-01 70.8% 78.9%
3198759 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 49.0 4.52e-01 97.2% 78.9%
3317456 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.56 44.0 3.96e-01 93.1% 62.0%
3815552 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.52 38.0 3.30e-01 93.1% 48.3%
3343538 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.51 36.0 3.58e-01 93.1% 72.0%
3887996 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 43.0 3.31e-01 97.2% 66.7%
3820953 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.51 35.0 3.30e-01 72.2% 66.7%