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AB775548.1__BAO20653.1__X__00053
Bact-VirAB775548.1__BAO20653.1__X__00053
Identity
- Accession:
- AB775548 ↗
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Taxonomy
TaxID: 1279082
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-67
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01139.23 best | RtcB | 75.1 | 9.20e-21 | 100.0% | 16.4% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2epgB00 | 3.90.1860.10 | Alpha Beta › Alpha-Beta Complex › tRNA-splicing ligase RtcB › tRNA-splicing ligase RtcB | 0.93 | 86.0 | 4.98e-01 | 100.0% | 16.5% |
| 2q2gB01 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.52 | 36.0 | 3.45e-01 | 72.4% | 89.7% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 37.0 | 3.57e-01 | 93.1% | 66.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599440 | 304.106.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 | 0.99 | 95.0 | 5.59e-01 | 100.0% | 22.3% |
| 4029069 | 304.106.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 › RtcB | 0.99 | 95.0 | 5.45e-01 | 100.0% | 15.9% |
| 3704376 | 304.106.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 › RtcB | 0.97 | 93.0 | 5.35e-01 | 100.0% | 14.1% |
| 2172423 | 3529.1.1.4 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_4 | 0.61 | 37.0 | 3.87e-01 | 70.7% | 68.0% |
| 4959949 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.59 | 40.0 | 3.87e-01 | 93.1% | 63.1% |
| 4962604 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.55 | 39.0 | 3.77e-01 | 93.1% | 66.2% |
| 3405175 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.52 | 36.0 | 3.31e-01 | 72.4% | 67.5% |
| 5002756 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.52 | 41.0 | 3.77e-01 | 96.6% | 66.7% |
D2
medium
residues 68-137
Domain cluster:
rep: AB366653.2__BAG41528.1__X__00082__D353-415
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01139.23 best | RtcB | 79.3 | 4.80e-22 | 100.0% | 17.8% |