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AB797215.1__BAN78445.1__X__00095

Bact-Vir

AB797215.1__BAN78445.1__X__00095

Identity

Accession:
AB797215 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 84-178
PDB
D2 medium residues 20-81
PDB
D3 medium residues 267-339
PDB
D4 medium residues 340-442
PDB
D5 medium residues 443-578_598-641
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2inuA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.75 71.0 5.32e-01 99.4% 48.4%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.71 64.0 5.88e-01 99.4% 75.2%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.70 65.0 4.77e-01 99.4% 41.1%
4oj5C04 2.160.20.130 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.67 51.0 5.11e-01 97.8% 76.8%
7dmkA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.60 55.0 4.58e-01 96.7% 60.2%
3vsvA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.58 53.0 3.76e-01 97.2% 41.8%
8tmsA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.57 50.0 4.30e-01 94.4% 91.1%
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.54 48.0 4.06e-01 95.0% 77.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3534716 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.79 54.0 4.03e-01 100.0% 29.6%
3251052 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.77 65.0 5.37e-01 99.4% 53.2%
5062061 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.76 60.0 5.40e-01 100.0% 61.7%
4415076 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.75 54.0 4.40e-01 97.2% 41.9%
4982268 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 59.0 4.51e-01 99.4% 40.3%
4527582 207.2.1.76 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim, Beta_helix 0.72 64.0 4.87e-01 100.0% 43.6%
1121177 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.71 64.0 5.88e-01 99.4% 75.2%
4980210 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.69 54.0 4.19e-01 100.0% 39.2%
3307314 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.69 66.0 4.77e-01 100.0% 41.6%
4014880 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.68 64.0 4.94e-01 100.0% 50.7%
3198843 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.68 64.0 4.06e-01 100.0% 25.1%
3307012 207.2.2.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin › Glyco_hydro_28 0.68 57.0 6.09e-01 92.8% 98.8%
3261847 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.66 63.0 5.15e-01 100.0% 62.8%
2163978 207.10.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding 0.64 43.0 3.89e-01 97.2% 50.0%
3256108 207.2.1.43 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chlam_PMP 0.62 58.0 4.94e-01 97.8% 67.0%
3254891 207.6.1.8 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Nucleoporin_FG 0.62 42.0 4.74e-01 94.4% 91.1%
4944819 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.61 50.0 4.93e-01 98.9% 82.1%
3932133 208.7.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › PF28756 0.60 38.0 4.60e-01 94.4% 98.3%
4954462 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.59 52.0 3.95e-01 95.0% 48.0%
3941952 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.58 52.0 3.47e-01 95.0% 36.5%
3264283 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.57 53.0 3.88e-01 99.4% 41.9%
4973391 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.57 51.0 4.06e-01 94.4% 58.8%
3840038 207.2.1.83 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › VacA2 0.56 52.0 4.59e-01 99.4% 84.3%
3428314 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.56 50.0 4.23e-01 94.4% 83.2%
3888742 207.2.1.100 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › CEMIP_beta-hel 0.56 52.0 3.63e-01 100.0% 53.9%
4969266 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.55 51.0 3.18e-01 100.0% 30.6%
3260504 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.52 46.0 3.91e-01 97.8% 62.0%
4046149 207.1.1.24 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.50 46.0 4.03e-01 99.4% 70.6%
D6 medium residues 579-597_642-766
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.70 41.0 4.03e-01 83.3% 52.5%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.69 40.0 4.83e-01 84.0% 85.6%
3vsvA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.69 57.0 3.77e-01 86.1% 32.0%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.67 62.0 4.09e-01 97.9% 34.9%
2uvfB02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.64 60.0 4.06e-01 97.9% 53.7%
4nk6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.62 57.0 4.00e-01 97.9% 50.2%
4h09D00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.58 45.0 3.30e-01 86.1% 31.0%
2ahuA01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.51 34.0 2.81e-01 76.4% 35.2%
4pufA01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.51 41.0 3.22e-01 86.1% 41.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944811 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.85 57.0 4.99e-01 84.7% 48.3%
4014339 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.80 58.0 4.49e-01 88.2% 36.9%
4942768 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.74 60.0 5.38e-01 88.2% 63.7%
4030372 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.73 44.0 4.56e-01 84.7% 63.0%
3803805 207.2.1.4 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.73 52.0 4.65e-01 84.7% 54.7%
5060892 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.71 56.0 4.18e-01 86.1% 36.8%
3492291 207.4.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.71 41.0 3.98e-01 83.3% 50.3%
4980561 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.71 56.0 4.04e-01 87.5% 31.9%
3286791 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.71 42.0 4.83e-01 84.7% 77.3%
5068801 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.70 59.0 4.80e-01 88.2% 51.6%
3284600 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.69 40.0 4.99e-01 84.7% 92.2%
5069437 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.67 54.0 4.21e-01 86.1% 43.6%
3530807 207.2.1.62 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › G8+CEMIP_beta-hel 0.66 61.0 3.90e-01 98.6% 27.4%
4963682 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.65 53.0 5.10e-01 86.1% 79.4%
3716497 207.2.1.70 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.65 54.0 3.53e-01 86.1% 27.5%
4963653 207.8.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.65 58.0 4.06e-01 97.2% 68.9%
3330906 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.64 60.0 4.85e-01 99.3% 85.8%
3400664 207.2.1.70 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.64 53.0 4.48e-01 87.5% 78.7%
3175357 207.6.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.60 47.0 4.75e-01 85.4% 82.1%
3987739 207.4.1.6 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CFSR 0.58 50.0 4.25e-01 95.1% 68.3%
3989911 207.2.1.35 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DUF4097 0.56 44.0 3.65e-01 81.2% 58.8%
3713644 207.4.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.52 41.0 3.68e-01 83.3% 66.2%
D7 medium residues 767-938
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gq8A01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.71 67.0 4.79e-01 100.0% 59.1%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.69 64.0 4.71e-01 98.8% 73.9%
5gkqB01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.69 61.0 4.57e-01 94.2% 62.2%
7chuA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.68 63.0 4.84e-01 98.8% 66.1%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.66 40.0 5.00e-01 79.1% 98.1%
3jurA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.66 62.0 4.51e-01 100.0% 68.2%
4nk6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.66 62.0 4.53e-01 100.0% 63.0%
4hwvB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.65 61.0 4.34e-01 100.0% 73.3%
2uvfB02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.65 61.0 4.42e-01 100.0% 66.5%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.65 37.0 4.77e-01 83.1% 97.9%
3zscA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.64 59.0 4.73e-01 100.0% 59.3%
4pmhA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.62 57.0 4.42e-01 98.8% 65.8%
3grhA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.61 56.0 4.22e-01 98.3% 62.5%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.61 50.0 5.29e-01 93.6% 95.5%
2f3lA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.58 42.0 4.67e-01 94.2% 96.2%
3syjA02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.55 49.0 3.31e-01 95.3% 37.3%
1xkuA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.53 46.0 3.85e-01 95.3% 73.4%
2bm5B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.50 44.0 4.41e-01 95.3% 95.6%
2w7zA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.50 45.0 4.30e-01 99.4% 93.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945380 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.74 36.0 4.70e-01 73.3% 81.0%
364252 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.71 67.0 4.79e-01 100.0% 59.0%
4944588 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.70 57.0 5.54e-01 89.0% 77.8%
5067457 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.70 66.0 4.82e-01 100.0% 51.9%
5017766 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.69 62.0 4.43e-01 94.8% 43.6%
4963684 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.69 62.0 4.58e-01 94.2% 67.6%
4982073 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.69 63.0 4.98e-01 97.1% 72.8%
3286791 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.68 39.0 4.84e-01 76.7% 88.2%
4290646 207.2.1.70 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.68 64.0 4.54e-01 100.0% 55.7%
4944828 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.68 62.0 5.27e-01 95.3% 85.4%
4944457 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.68 61.0 5.05e-01 95.3% 87.6%
3203125 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.67 59.0 4.02e-01 91.3% 42.4%
5050408 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.67 63.0 4.63e-01 100.0% 54.2%
5040394 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.67 55.0 5.25e-01 93.0% 73.7%
4944636 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.67 63.0 5.11e-01 100.0% 84.5%
3810601 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.67 52.0 5.04e-01 80.8% 81.4%
5027419 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.67 63.0 4.24e-01 100.0% 39.7%
3814525 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.67 63.0 4.72e-01 100.0% 73.3%
3368264 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.67 63.0 4.52e-01 100.0% 62.8%
5060892 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.67 61.0 4.92e-01 97.1% 70.2%
3921234 207.2.1.70 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.67 60.0 4.76e-01 95.3% 64.9%
4945007 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.66 61.0 4.03e-01 97.1% 32.6%
4970242 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.66 59.0 5.30e-01 93.6% 82.6%
5022133 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.66 61.0 5.00e-01 98.3% 69.3%
5049754 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.65 61.0 4.93e-01 97.7% 69.0%
4952562 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.65 59.0 4.63e-01 95.9% 56.5%
5045771 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.65 62.0 4.81e-01 100.0% 83.5%
3834510 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.65 60.0 4.86e-01 99.4% 73.1%
5034346 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.65 61.0 4.77e-01 100.0% 73.8%
4980388 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.65 60.0 4.23e-01 97.7% 49.1%
5020783 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.65 58.0 3.96e-01 94.8% 37.7%
3668060 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.64 58.0 5.04e-01 95.3% 81.2%
5054710 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.63 59.0 4.93e-01 98.3% 64.3%
3425321 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.63 59.0 5.07e-01 99.4% 83.5%
3257167 207.2.1.88 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › PF29730 0.63 58.0 4.01e-01 100.0% 47.4%
3600119 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.63 59.0 4.46e-01 100.0% 76.9%
4969537 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.62 57.0 4.65e-01 97.1% 74.3%
3255127 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.62 57.0 4.59e-01 99.4% 74.8%
5038913 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.62 55.0 4.60e-01 93.6% 69.6%
3986608 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.62 53.0 4.48e-01 93.6% 98.6%
3256803 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.62 56.0 4.80e-01 97.7% 82.6%
3585250 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.62 55.0 4.63e-01 95.3% 84.6%
3374610 207.2.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 0.61 56.0 5.04e-01 97.7% 80.7%
3254555 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.59 55.0 4.68e-01 100.0% 76.4%
3260502 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.59 53.0 4.43e-01 97.1% 79.3%
3932133 208.7.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › PF28756 0.59 39.0 4.68e-01 93.6% 100.0%
4884477 207.2.1.4 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.58 51.0 4.84e-01 93.0% 98.5%
3432723 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.57 46.0 4.10e-01 93.0% 60.8%
3274046 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.56 50.0 3.95e-01 95.9% 56.5%
3903674 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.52 40.0 3.65e-01 93.6% 59.6%
D8 medium residues 1020-1072
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.67 51.0 4.34e-01 92.5% 51.2%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 40.0 3.81e-01 94.3% 51.6%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.64 39.0 3.13e-01 92.5% 28.3%
3klkA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.63 48.0 3.49e-01 84.9% 94.4%
3vmaA03 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.62 52.0 4.34e-01 92.5% 55.6%
2wesA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 2.88e-01 94.3% 53.6%
4maaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 50.0 3.57e-01 98.1% 36.5%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.58 41.0 4.28e-01 75.5% 97.9%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.58 41.0 4.16e-01 75.5% 92.2%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.57 40.0 3.34e-01 73.6% 53.7%
1usgA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 44.0 3.31e-01 90.6% 33.3%
1d2mA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.56 46.0 4.28e-01 94.3% 87.0%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 44.0 2.77e-01 94.3% 40.7%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.55 46.0 4.24e-01 100.0% 94.5%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 46.0 2.89e-01 100.0% 40.8%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.55 38.0 3.63e-01 73.6% 90.3%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.87e-01 96.2% 38.8%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.54 37.0 3.64e-01 75.5% 96.7%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 2.60e-01 84.9% 24.8%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.76e-01 100.0% 42.2%
5iduC02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.53 38.0 3.22e-01 83.0% 99.1%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.76e-01 98.1% 38.0%
1ovmA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.53 42.0 3.05e-01 88.7% 77.6%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.53 43.0 3.15e-01 98.1% 81.2%
1ng4A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 39.0 2.99e-01 84.9% 99.3%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 41.0 2.85e-01 96.2% 72.3%
1qhuA01 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.52 42.0 2.99e-01 96.2% 61.2%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.66e-01 77.4% 78.0%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.51 40.0 3.53e-01 86.8% 68.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4135015 506.2.1.2 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.71 52.0 4.40e-01 94.3% 46.7%
5001934 2004.1.1.554 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter 0.71 52.0 3.07e-01 94.3% 10.2%
3839366 506.2.1.2 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.70 50.0 4.25e-01 94.3% 45.6%
None 0.69 52.0 3.07e-01 92.5% 10.6%
5051212 506.2.1.2 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.67 52.0 4.34e-01 92.5% 48.9%
5038704 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.67 55.0 3.87e-01 94.3% 74.4%
None 0.67 53.0 3.00e-01 88.7% 10.3%
3164741 506.2.1.1 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UB2H 0.63 49.0 4.33e-01 86.8% 61.3%
4237852 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.61 49.0 3.25e-01 92.5% 90.4%
5026481 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.60 43.0 4.40e-01 75.5% 92.0%
3982644 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.60 51.0 3.18e-01 100.0% 49.7%
3914877 5.1.4.158 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.60 42.0 2.55e-01 75.5% 83.6%
3617004 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 3.42e-01 79.2% 97.4%
3990241 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.59 40.0 4.33e-01 71.7% 88.4%
3971347 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.58 40.0 3.98e-01 73.6% 86.2%
3976685 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.58 40.0 4.07e-01 73.6% 100.0%
4498816 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 50.0 3.03e-01 98.1% 40.0%
5056525 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.58 48.0 3.00e-01 98.1% 33.2%
4009007 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.58 39.0 4.06e-01 71.7% 96.0%
3230187 391.1.2.9 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.58 39.0 3.56e-01 71.7% 62.7%
2389402 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.57 40.0 4.03e-01 75.5% 87.0%
3972100 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.57 41.0 3.86e-01 77.4% 89.2%
3794367 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.57 49.0 3.29e-01 100.0% 85.4%
4018320 5.1.8.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › WD40 0.57 40.0 2.73e-01 73.6% 44.7%
1883379 1103.1.1.1 mixed a+b and a/b › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › MvcA_ins 0.57 44.0 3.84e-01 96.2% 53.3%
3998928 5.1.5.236 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st 0.56 47.0 3.19e-01 94.3% 99.0%
3627903 5.1.11.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_HPS5 0.56 46.0 2.69e-01 92.5% 18.7%
3936024 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.04e-01 100.0% 51.3%
4823114 5.1.4.265 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.56 48.0 3.60e-01 100.0% 78.7%
3694123 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 47.0 2.82e-01 98.1% 46.1%
3439828 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 47.0 2.92e-01 100.0% 45.1%
None 0.55 43.0 2.66e-01 92.5% 65.0%
1291025 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.55 46.0 4.24e-01 100.0% 94.5%
3533928 5.1.4.171 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HELP+Beta-prop_EML 0.55 47.0 2.86e-01 98.1% 95.3%
3832495 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.85e-01 100.0% 43.0%
3546533 5.1.4.269 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.54 46.0 2.83e-01 98.1% 40.8%
4156758 4354.1.1.1 a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.54 47.0 3.57e-01 100.0% 83.1%
4014744 5.1.4.300 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR5 0.54 45.0 2.74e-01 100.0% 33.3%
3482943 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.76e-01 100.0% 35.3%
4001552 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 47.0 2.89e-01 100.0% 38.4%
3705445 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.53 45.0 2.64e-01 96.2% 24.0%
3941306 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.53 45.0 2.80e-01 100.0% 41.9%
3614697 5.1.4.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.53 44.0 2.61e-01 94.3% 34.4%
3507975 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.53 43.0 2.77e-01 100.0% 37.1%
4986252 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 37.0 4.03e-01 77.4% 88.9%
4992901 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 45.0 2.90e-01 98.1% 53.5%
3203471 5.1.5.181 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, PQQ_2, Beta-prop_NOL10_N 0.52 45.0 2.61e-01 100.0% 22.1%
5023356 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 45.0 2.71e-01 98.1% 41.1%
3221779 2003.1.2.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.51 39.0 2.53e-01 92.5% 64.8%
1820980 79.1.1.2 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 0.50 40.0 2.78e-01 96.2% 33.5%
4013501 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 2.65e-01 100.0% 25.8%