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AB854109.1__BAN92313.1__X__00002

Bact-Vir

AB854109.1__BAN92313.1__X__00002

Identity

Accession:
AB854109 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Jiaoyazivirus› Ralstonia_phage_RSB3

TaxID: 1402875

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-83
PDB
Domain cluster: rep: OP535472.1__UXR08034.1__X__00044__D122-210
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 51.0 4.66e-01 79.5% 55.2%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 48.0 5.04e-01 70.5% 76.1%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 49.0 5.10e-01 75.6% 80.3%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 41.0 3.69e-01 85.9% 44.0%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.66 42.0 4.15e-01 100.0% 60.2%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 45.0 4.72e-01 73.1% 78.9%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.62 33.0 3.47e-01 100.0% 55.6%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 39.0 3.56e-01 100.0% 46.8%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 36.0 3.37e-01 100.0% 47.9%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 52.0 4.02e-01 100.0% 90.1%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 39.0 3.59e-01 100.0% 51.5%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 35.0 3.20e-01 96.2% 44.1%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 45.0 3.77e-01 91.0% 100.0%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 38.0 3.19e-01 100.0% 38.8%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 37.0 2.60e-01 70.5% 39.8%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.54 37.0 3.68e-01 100.0% 66.3%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 38.0 2.90e-01 74.4% 32.8%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.70e-01 75.6% 95.5%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 37.0 2.87e-01 74.4% 33.2%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 41.0 2.84e-01 88.5% 92.9%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 36.0 2.79e-01 73.1% 85.8%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.52 46.0 4.13e-01 100.0% 90.9%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.52 44.0 3.87e-01 98.7% 94.3%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.52 42.0 4.14e-01 92.3% 81.2%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.67e-01 92.3% 66.7%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.51 41.0 4.00e-01 89.7% 84.1%
2p2sA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 41.0 3.17e-01 100.0% 37.2%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3619264 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 49.0 4.70e-01 74.4% 62.2%
3449957 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 49.0 4.62e-01 73.1% 60.0%
3299579 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 48.0 5.01e-01 73.1% 82.9%
3305941 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 51.0 4.38e-01 79.5% 66.7%
5810 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 51.0 4.71e-01 80.8% 64.6%
5035783 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.66 41.0 4.15e-01 100.0% 61.3%
4159609 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.65 45.0 3.55e-01 73.1% 83.4%
4109482 223.1.1.182 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3369 0.64 44.0 3.42e-01 71.8% 33.5%
5038034 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.63 40.0 3.83e-01 100.0% 54.4%
4945786 304.120.1.19 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › THUMP 0.63 40.0 4.11e-01 100.0% 66.7%
4032398 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.62 52.0 4.45e-01 94.9% 87.7%
4032585 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.62 36.0 3.52e-01 97.4% 51.8%
4626944 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.62 52.0 4.49e-01 94.9% 91.2%
3603400 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.61 40.0 4.10e-01 100.0% 69.3%
4027687 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.61 40.0 4.64e-01 70.5% 98.2%
3514659 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 41.0 3.82e-01 78.2% 58.0%
5018724 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.58 52.0 4.87e-01 100.0% 89.5%
3885545 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 33.0 3.57e-01 100.0% 67.7%
3622016 2484.5.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 0.56 48.0 4.40e-01 97.4% 95.2%
3168940 109.4.1.64 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.55 42.0 2.83e-01 82.1% 49.7%
5003371 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 48.0 4.72e-01 98.7% 94.1%
3716521 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 39.0 2.53e-01 75.6% 38.6%
3284535 295.1.1.13 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3090 0.54 46.0 3.98e-01 93.6% 90.0%
5045521 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 45.0 3.91e-01 100.0% 94.1%
4029815 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 36.0 3.04e-01 85.9% 41.5%
3937352 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 46.0 4.10e-01 100.0% 67.0%
3408369 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.53 40.0 4.10e-01 92.3% 86.7%
4307364 878.1.1.6 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › PF29774 0.53 43.0 3.77e-01 91.0% 75.8%
3942067 4120.1.1.44 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TraD_N 0.52 36.0 3.28e-01 88.5% 51.8%
5046112 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 44.0 3.25e-01 96.2% 75.9%
3223614 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 41.0 2.92e-01 91.0% 56.7%
4408503 192.2.1.43 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › TraD_N 0.52 36.0 3.02e-01 88.5% 42.2%
5040467 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.50 41.0 2.93e-01 91.0% 82.4%
3838659 5085.1.1.0 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.50 43.0 2.71e-01 94.9% 98.0%
3415024 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 41.0 2.74e-01 89.7% 52.5%