←Back to structures
AB916497.1__BAS32817.1__X__00019
Bact-VirAB916497.1__BAS32817.1__X__00019
Identity
- Accession:
- AB916497 ↗
- Kingdom:
- phage
Quality
66.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-49
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.89 | 80.0 | 5.14e-01 | 100.0% | 43.5% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.86 | 77.0 | 4.88e-01 | 100.0% | 23.5% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.85 | 76.0 | 6.76e-01 | 100.0% | 75.8% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.85 | 72.0 | 6.98e-01 | 95.5% | 100.0% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.84 | 74.0 | 6.68e-01 | 100.0% | 96.7% |
| 4hb1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.84 | 71.0 | 7.14e-01 | 95.5% | 100.0% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.83 | 74.0 | 6.52e-01 | 100.0% | 75.0% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.83 | 73.0 | 4.94e-01 | 100.0% | 29.5% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.82 | 73.0 | 6.14e-01 | 100.0% | 69.9% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.81 | 71.0 | 5.36e-01 | 100.0% | 41.5% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.80 | 68.0 | 6.20e-01 | 100.0% | 95.1% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.80 | 68.0 | 6.22e-01 | 100.0% | 78.7% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.79 | 68.0 | 5.47e-01 | 100.0% | 50.6% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.77 | 64.0 | 6.00e-01 | 100.0% | 75.9% |
| 4fppB01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.77 | 66.0 | 5.69e-01 | 100.0% | 66.2% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 64.0 | 5.92e-01 | 100.0% | 73.7% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 64.0 | 5.08e-01 | 100.0% | 45.4% |
| 2pqrA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.76 | 62.0 | 4.84e-01 | 93.2% | 43.0% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 64.0 | 5.79e-01 | 100.0% | 71.9% |
| 3lnnB03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 62.0 | 5.53e-01 | 97.7% | 100.0% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.74 | 66.0 | 4.98e-01 | 100.0% | 50.5% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.73 | 57.0 | 5.05e-01 | 100.0% | 56.8% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.72 | 61.0 | 5.19e-01 | 100.0% | 57.1% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 53.0 | 4.61e-01 | 100.0% | 50.0% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.72 | 61.0 | 4.34e-01 | 100.0% | 33.3% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.71 | 58.0 | 4.64e-01 | 88.6% | 59.5% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.71 | 60.0 | 5.80e-01 | 95.5% | 95.9% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 55.0 | 4.84e-01 | 100.0% | 57.7% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.68 | 52.0 | 3.21e-01 | 100.0% | 13.6% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 51.0 | 4.92e-01 | 100.0% | 94.8% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 56.0 | 4.77e-01 | 100.0% | 56.4% |
| 2greA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.65 | 53.0 | 3.40e-01 | 93.2% | 94.1% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.63 | 49.0 | 4.31e-01 | 100.0% | 55.6% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 51.0 | 4.47e-01 | 95.5% | 59.7% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.63 | 49.0 | 4.65e-01 | 100.0% | 90.2% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.63 | 48.0 | 2.91e-01 | 100.0% | 11.1% |
| 2gsqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 51.0 | 4.04e-01 | 100.0% | 43.5% |
| 2vdwG00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 47.0 | 2.89e-01 | 90.9% | 14.1% |
| 2zfuA01 | 1.10.10.2150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal RNA-processing protein 8, N-terminal domain | 0.55 | 43.0 | 4.19e-01 | 100.0% | 88.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3343376 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.88 | 80.0 | 8.00e-01 | 100.0% | 97.8% |
| 4299170 | 192.7.1.4 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C | 0.87 | 78.0 | 6.64e-01 | 100.0% | 92.9% |
| 3601996 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 74.0 | 4.33e-01 | 93.2% | 13.0% |
| 4940281 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.85 | 65.0 | 5.74e-01 | 100.0% | 56.9% |
| 3289802 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.85 | 75.0 | 4.17e-01 | 100.0% | 8.0% |
| 3216584 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.85 | 77.0 | 5.87e-01 | 100.0% | 46.3% |
| 5047356 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.84 | 75.0 | 6.56e-01 | 100.0% | 72.3% |
| 5006936 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.84 | 74.0 | 6.48e-01 | 100.0% | 69.2% |
| 4181677 | 192.29.1.272 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Val_tRNA-synt_C | 0.83 | 72.0 | 6.21e-01 | 100.0% | 72.9% |
| 3968144 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.82 | 72.0 | 6.37e-01 | 100.0% | 80.0% |
| 3330792 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.81 | 70.0 | 6.23e-01 | 100.0% | 67.7% |
| 3368426 | 109.4.1.1472 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2, THOC2_N | 0.81 | 70.0 | 3.78e-01 | 100.0% | 4.9% |
| 3739454 | 192.5.1.38 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 | 0.79 | 66.0 | 5.13e-01 | 100.0% | 96.2% |
| 3456370 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.79 | 67.0 | 4.64e-01 | 100.0% | 29.0% |
| 4959390 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.78 | 68.0 | 5.85e-01 | 100.0% | 67.1% |
| 3490268 | 148.1.3.13 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 | 0.78 | 67.0 | 3.97e-01 | 100.0% | 13.3% |
| 4944529 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 64.0 | 5.87e-01 | 100.0% | 80.0% |
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.73 | 62.0 | 5.09e-01 | 100.0% | 51.8% |
| 4367294 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.71 | 58.0 | 5.56e-01 | 100.0% | 83.3% |
| 3577937 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 59.0 | 4.45e-01 | 97.7% | 66.1% |
| 4147837 | 192.1.1.41 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › Val_tRNA-synt_C | 0.70 | 56.0 | 5.18e-01 | 100.0% | 69.2% |
| 4487944 | 605.1.1.131 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C | 0.70 | 55.0 | 5.10e-01 | 100.0% | 69.2% |
| 3935587 | 300.1.1.3 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Tyr-DNA_phospho | 0.68 | 55.0 | 3.60e-01 | 90.9% | 25.6% |
| 3596712 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.67 | 53.0 | 3.85e-01 | 100.0% | 40.7% |
| 3504303 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 55.0 | 4.24e-01 | 97.7% | 79.0% |
| 4445312 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.64 | 50.0 | 4.93e-01 | 95.5% | 100.0% |
| 3408508 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.64 | 49.0 | 4.35e-01 | 100.0% | 55.0% |
D2
high
residues 61-139