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AB920995.1__BAP15812.1__X__00006

Bact-Vir

AB920995.1__BAP15812.1__X__00006

Identity

Accession:
AB920995 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.78 59.0 5.34e-01 85.5% 60.8%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 56.0 4.45e-01 87.3% 45.9%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 55.0 4.42e-01 87.3% 44.5%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.70 59.0 4.68e-01 96.4% 46.6%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 51.0 4.16e-01 80.0% 44.7%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 4.24e-01 87.3% 46.6%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 44.0 4.87e-01 89.1% 100.0%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.63 43.0 3.40e-01 83.6% 33.9%
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 44.0 4.12e-01 78.2% 59.4%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.62 51.0 4.48e-01 94.5% 90.6%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 45.0 4.29e-01 81.8% 81.8%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 3.97e-01 94.5% 91.2%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 3.51e-01 94.5% 62.7%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 49.0 3.97e-01 100.0% 87.5%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.59 45.0 3.97e-01 85.5% 87.1%
2vzoA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 48.0 2.98e-01 90.9% 31.3%
1x5eA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 44.0 3.53e-01 81.8% 92.7%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 42.0 3.41e-01 98.2% 41.3%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.57 49.0 3.64e-01 100.0% 53.6%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.56 45.0 3.43e-01 98.2% 71.7%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 41.0 4.14e-01 85.5% 87.7%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 45.0 4.02e-01 98.2% 71.6%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.44e-01 85.5% 73.3%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.56 47.0 4.30e-01 100.0% 83.1%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.56 43.0 3.14e-01 89.1% 30.1%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 47.0 3.16e-01 98.2% 30.3%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 44.0 2.94e-01 96.4% 48.7%
2pofA00 3.30.428.30 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT family - CDH-like 0.55 45.0 3.01e-01 90.9% 61.8%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.55 46.0 3.27e-01 94.5% 64.2%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.29e-01 100.0% 57.8%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.36e-01 83.6% 81.1%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 31.0 3.18e-01 70.9% 52.7%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 42.0 2.58e-01 90.9% 23.1%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 41.0 3.80e-01 87.3% 67.1%
3h49B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 40.0 2.58e-01 83.6% 25.1%
3dnhA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.53 42.0 3.72e-01 89.1% 85.5%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 46.0 3.75e-01 98.2% 55.9%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.52 34.0 3.01e-01 98.2% 43.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.59e-01 87.3% 68.6%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 2.73e-01 96.4% 63.4%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.51 39.0 3.25e-01 94.5% 47.4%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 36.0 3.12e-01 81.8% 62.1%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.50 38.0 2.92e-01 87.3% 87.2%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964361 502.1.1.3 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › DUF7348 0.77 62.0 5.70e-01 94.5% 68.6%
4202176 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.73 57.0 3.84e-01 87.3% 24.2%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.71 55.0 3.79e-01 87.3% 24.9%
5058121 2004.1.1.1224 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF31144 0.70 47.0 2.94e-01 80.0% 12.7%
3274553 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 54.0 4.39e-01 87.3% 44.8%
3347387 220.1.1.113 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_11 0.70 55.0 3.92e-01 85.5% 30.3%
4943079 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 53.0 3.87e-01 83.6% 30.3%
4543309 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 54.0 4.26e-01 85.5% 41.7%
3650726 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 53.0 3.84e-01 85.5% 30.3%
3510574 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.68 54.0 4.45e-01 87.3% 48.0%
3503857 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 53.0 4.29e-01 87.3% 44.5%
3475007 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 54.0 4.30e-01 87.3% 44.5%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 49.0 4.99e-01 81.8% 78.2%
3415741 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 57.0 4.24e-01 96.4% 38.6%
3926600 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 53.0 4.24e-01 87.3% 43.6%
3520218 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 53.0 4.14e-01 87.3% 40.0%
3629491 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 52.0 5.26e-01 85.5% 87.3%
3791186 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 50.0 4.43e-01 81.8% 56.2%
3628059 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 51.0 3.97e-01 85.5% 37.6%
5051418 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 54.0 4.03e-01 89.1% 54.1%
3476418 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 52.0 3.92e-01 87.3% 35.6%
3280935 300.1.1.12 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.66 52.0 3.57e-01 87.3% 77.7%
4065466 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.66 46.0 4.10e-01 78.2% 51.2%
3899369 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 51.0 3.73e-01 85.5% 32.0%
3419950 220.1.1.113 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_11 0.65 50.0 3.83e-01 85.5% 34.8%
3620293 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 3.90e-01 87.3% 36.9%
3548274 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 53.0 4.15e-01 90.9% 86.7%
3607176 101.17.1.4 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_2 0.65 39.0 3.43e-01 98.2% 40.2%
3719029 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.65 50.0 3.57e-01 85.5% 43.6%
5074664 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 51.0 3.82e-01 87.3% 34.3%
3621943 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 54.0 4.18e-01 96.4% 88.5%
3791231 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 51.0 3.96e-01 87.3% 40.0%
4960280 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 51.0 4.29e-01 89.1% 66.3%
3185896 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.63 53.0 3.37e-01 96.4% 42.1%
3663043 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 49.0 3.86e-01 87.3% 38.4%
5051533 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 3.86e-01 83.6% 42.7%
3798461 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 49.0 3.83e-01 85.5% 45.8%
4979972 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 47.0 3.66e-01 85.5% 34.8%
3863010 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.62 54.0 3.27e-01 100.0% 28.1%
4162535 4205.1.1.5 a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SUKH_6 0.62 48.0 3.62e-01 92.7% 33.1%
5048050 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 3.06e-01 85.5% 16.5%
3688725 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.62 48.0 3.81e-01 89.1% 84.8%
3269508 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 3.82e-01 87.3% 41.7%
3196041 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 45.0 2.76e-01 80.0% 25.9%
3452325 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 50.0 3.48e-01 94.5% 32.5%
2048178 244.2.1.10 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.61 42.0 4.01e-01 74.5% 60.6%
3478704 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 41.0 3.96e-01 70.9% 61.5%
3939443 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.60 52.0 4.23e-01 100.0% 59.1%
3245311 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 49.0 4.11e-01 98.2% 50.5%
4679015 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.60 45.0 4.04e-01 85.5% 56.2%
5059406 220.1.1.291 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_4 0.60 46.0 4.19e-01 85.5% 66.7%
3627160 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.59 45.0 3.58e-01 81.8% 40.7%
3497363 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 48.0 3.90e-01 92.7% 96.4%
3706976 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 51.0 3.31e-01 100.0% 34.5%
3229412 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 47.0 3.97e-01 98.2% 50.5%
3215840 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.57 46.0 3.10e-01 98.2% 20.4%
3239831 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 47.0 3.64e-01 100.0% 46.4%
3739215 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.56 44.0 2.92e-01 90.9% 40.4%
4962147 2003.1.1.391 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA_C3 0.56 49.0 3.02e-01 100.0% 71.5%
5025916 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 3.52e-01 96.4% 93.1%
3226291 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 3.63e-01 98.2% 45.6%
4584882 5046.1.1.1 extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B 0.55 38.0 2.39e-01 70.9% 42.7%
3216450 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.55 45.0 3.39e-01 94.5% 44.7%
4015822 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 46.0 2.82e-01 94.5% 93.0%
3245992 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.55 45.0 3.00e-01 100.0% 21.1%
4024124 148.1.3.40 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid 0.54 46.0 3.44e-01 100.0% 62.0%
4931822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.78e-01 80.0% 78.5%
3620434 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.54 43.0 3.58e-01 98.2% 96.5%
3223155 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 43.0 2.90e-01 96.4% 21.3%
3164582 4353.1.1.1 a/b three-layered sandwiches › C-terminal domain in CAC2185-like proteins › C-terminal domain in CAC2185-like proteins › C-terminal domain in CAC2185-like proteins › DUF1919 0.53 42.0 2.93e-01 90.9% 25.3%
3924546 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.53 44.0 3.44e-01 98.2% 47.7%
3379650 325.1.4.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Nicotinate/Quinolinate PRTase N-terminal domain-like › NAPRTase_N 0.52 42.0 3.33e-01 87.3% 92.7%
5051706 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.52 46.0 3.78e-01 100.0% 78.0%
3212890 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 41.0 2.78e-01 96.4% 20.9%
4971247 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 43.0 3.77e-01 90.9% 98.8%
4360499 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 40.0 3.38e-01 96.4% 50.4%
3315025 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.51 38.0 3.51e-01 87.3% 83.7%
4975819 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 42.0 2.82e-01 92.7% 82.7%