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AB967974.1__BAP94468.1__X__00011

Bact-Vir

AB967974.1__BAP94468.1__X__00011

Identity

Accession:
AB967974 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-88
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.79 66.0 6.74e-01 89.8% 91.7%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 45.0 5.34e-01 76.1% 94.8%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 52.0 5.42e-01 76.1% 95.2%
4uhvA04 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.72 60.0 5.68e-01 89.8% 87.4%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 51.0 5.35e-01 79.5% 82.3%
3zjyC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 48.0 5.17e-01 79.5% 83.8%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 52.0 5.59e-01 86.4% 95.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.68 31.0 2.90e-01 71.6% 33.9%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 47.0 5.41e-01 75.0% 100.0%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 50.0 4.14e-01 79.5% 52.1%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 37.0 4.38e-01 75.0% 91.4%
2khjA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 4.57e-01 81.8% 83.1%
1ykdB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 42.0 3.35e-01 75.0% 78.8%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 40.0 4.02e-01 70.5% 98.9%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.58 47.0 4.66e-01 89.8% 98.9%
2vnuD01 2.40.50.690 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 43.0 4.09e-01 79.5% 77.7%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 30.0 3.43e-01 78.4% 72.6%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 40.0 2.86e-01 79.5% 43.0%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 37.0 3.14e-01 70.5% 88.6%
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.52 36.0 3.69e-01 71.6% 100.0%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.29e-01 79.5% 82.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1731165 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.83 71.0 7.13e-01 90.9% 89.9%
3946740 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.80 69.0 6.90e-01 94.3% 90.0%
3165931 2.7.1.3 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_Mu_Gp45 0.80 65.0 6.68e-01 90.9% 90.6%
5003246 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.78 61.0 5.02e-01 81.8% 52.0%
5058911 2.7.1.0 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N 0.77 65.0 6.00e-01 89.8% 80.9%
3971883 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.77 59.0 3.82e-01 80.7% 23.2%
4957569 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.76 59.0 5.74e-01 80.7% 78.9%
3970551 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.76 59.0 4.59e-01 81.8% 47.8%
3970828 2.7.1.0 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N 0.75 60.0 4.56e-01 85.2% 44.6%
3967453 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.75 60.0 5.84e-01 85.2% 92.6%
4413978 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.75 60.0 4.20e-01 85.2% 34.2%
None 0.74 59.0 5.77e-01 85.2% 91.6%
3594041 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 49.0 5.63e-01 76.1% 93.8%
4995814 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.72 55.0 4.49e-01 80.7% 51.2%
4927618 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.70 49.0 4.79e-01 79.5% 66.3%
4024623 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.69 51.0 5.34e-01 79.5% 85.0%
4889459 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 45.0 4.45e-01 80.7% 62.8%
3587562 2.1.1.104 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CvfB_1st 0.68 50.0 5.49e-01 77.3% 97.1%
3854815 2.1.1.177 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.67 52.0 5.10e-01 81.8% 76.8%
3802091 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.67 52.0 4.36e-01 81.8% 64.8%
3740036 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.67 52.0 5.27e-01 81.8% 87.1%
3468143 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 51.0 4.20e-01 81.8% 59.4%
4119295 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.67 49.0 5.00e-01 76.1% 81.2%
3558931 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.66 50.0 4.09e-01 79.5% 61.9%
3609631 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.66 47.0 3.93e-01 73.9% 61.3%
3737198 2.1.1.82 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_CSD1 0.66 43.0 4.53e-01 79.5% 73.8%
3616997 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 51.0 4.93e-01 83.0% 82.0%
4502670 2.1.1.177 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.65 51.0 3.81e-01 81.8% 37.6%
3400464 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 52.0 4.54e-01 85.2% 73.1%
3930537 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 5.11e-01 81.8% 88.2%
4298622 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.65 50.0 4.87e-01 81.8% 80.0%
4654307 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.64 46.0 5.05e-01 73.9% 92.9%
4609120 2.1.1.127 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.64 49.0 4.90e-01 81.8% 86.7%
3457938 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.64 49.0 4.73e-01 81.8% 84.0%
4309540 2.1.1.127 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.64 49.0 4.65e-01 81.8% 74.3%
4113274 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 48.0 5.16e-01 81.8% 98.7%
3311558 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.62 47.0 4.65e-01 81.8% 81.1%
3180337 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 52.0 4.22e-01 92.0% 56.4%
3964207 2.1.1.127 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.61 48.0 4.59e-01 85.2% 77.1%
3490807 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.61 43.0 3.45e-01 72.7% 39.1%
3307643 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.61 48.0 4.82e-01 85.2% 82.2%
3225974 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 4.70e-01 81.8% 92.2%
3951115 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 4.87e-01 80.7% 97.5%
3511673 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 47.0 3.25e-01 81.8% 25.2%
5042874 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 45.0 4.20e-01 81.8% 81.7%
4025575 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 44.0 3.91e-01 79.5% 85.4%
3596888 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 43.0 4.00e-01 79.5% 82.7%
4004815 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.54 31.0 2.78e-01 83.0% 39.8%
3721787 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 32.0 3.30e-01 77.3% 61.2%
3297746 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 38.0 3.00e-01 80.7% 68.1%
D2 medium residues 96-148
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j4nC01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 52.0 3.22e-01 100.0% 42.2%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.62 51.0 3.25e-01 96.2% 86.8%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 44.0 2.71e-01 79.2% 61.1%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.59 47.0 2.78e-01 96.2% 13.9%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.57 46.0 3.29e-01 92.5% 82.4%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 2.90e-01 71.7% 67.9%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.55 42.0 2.97e-01 86.8% 68.8%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 40.0 3.05e-01 90.6% 53.5%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.53 41.0 2.80e-01 83.0% 41.0%
1q25A03 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.53 36.0 2.74e-01 73.6% 53.1%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.51e-01 75.5% 100.0%
3h09B02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 41.0 2.48e-01 98.1% 36.1%
3c4nA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.51 39.0 3.13e-01 90.6% 100.0%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 40.0 3.57e-01 86.8% 63.6%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.67e-01 100.0% 53.7%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 2.66e-01 83.0% 57.5%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 2.57e-01 71.7% 47.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972332 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.90 60.0 4.54e-01 71.7% 32.2%
3970340 2.7.1.4 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › DUF6484 0.87 70.0 5.15e-01 86.8% 35.7%
3970534 79.1.1.17 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF2345 0.87 58.0 4.30e-01 71.7% 29.6%
1746334 79.1.1.12 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp138_C 0.83 63.0 5.22e-01 88.7% 47.8%
3971883 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.77 71.0 4.15e-01 100.0% 18.4%
3389476 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.63 51.0 3.57e-01 88.7% 45.6%
3169693 5.1.4.80 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.60 45.0 2.78e-01 84.9% 55.6%
3708068 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 2.89e-01 84.9% 52.9%
4033196 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.56 41.0 3.03e-01 79.2% 63.6%
3992656 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 47.0 3.09e-01 96.2% 29.6%
3508699 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 45.0 3.24e-01 98.1% 53.5%
4990499 2003.1.5.32 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Cons_hypoth95 0.51 40.0 2.62e-01 90.6% 66.9%