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AB967974.1__BAP94473.1__X__00016

Bact-Vir

AB967974.1__BAP94473.1__X__00016

Identity

Accession:
AB967974 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurantimonas_phage_AmM-1

TaxID: 1503929

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-99
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09684.16 best Tail_P2_I 55.5 8.60e-15 100.0% 44.6%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xkyA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 47.0 3.18e-01 100.0% 45.3%
4o1jA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.54 39.0 2.94e-01 78.6% 66.0%
6scjA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.67e-01 100.0% 77.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977563 102.7.1.1 ↗ alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I 0.94 77.0 6.09e-01 97.1% 46.2%
3716420 130.1.1.6 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 0.75 45.0 4.99e-01 71.4% 76.4%
3268404 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.71 46.0 4.96e-01 80.0% 78.3%
3368018 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.59 43.0 4.30e-01 77.1% 80.0%
3167710 3277.2.1.1 ↗ alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.53 33.0 2.96e-01 70.0% 46.3%
5005833 2007.1.14.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.50 41.0 3.07e-01 90.0% 42.2%
D2 medium residues 100-219
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ib8A01 3.30.300.70 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › RimP-like superfamily, N-terminal 0.57 32.0 3.75e-01 77.5% 79.5%
2mcqA01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.51 29.0 3.42e-01 96.7% 85.3%
2n8qA01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.51 33.0 3.58e-01 77.5% 81.9%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 34.0 3.12e-01 76.7% 53.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689488 327.10.1.12 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › PSP1 0.60 34.0 3.93e-01 95.8% 75.6%
5078110 327.5.1.10 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.54 34.0 3.70e-01 100.0% 76.0%
3716378 327.6.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.53 41.0 3.83e-01 80.0% 69.0%
3180822 315.1.1.6 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_3 0.51 43.0 3.99e-01 90.0% 81.2%
3646685 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.51 30.0 3.70e-01 75.8% 98.6%
3256073 2007.15.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF4062 0.51 35.0 3.00e-01 71.7% 62.0%