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AB983711.1__BAP34901.1__X__00007
Bact-VirAB983711.1__BAP34901.1__X__00007
Identity
- Accession:
- AB983711 ↗
- Kingdom:
- phage
Quality
68.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autonotataviridae›
Risjevirus›
Ralstonia_phage_RSJ5
TaxID: 1538364
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-77
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00542.25 best | Ribosomal_L12 | 39.3 | 9.10e-10 | 72.0% | 50.7% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.79 | 72.0 | 6.72e-01 | 100.0% | 87.9% |
| 4yjmC00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.79 | 70.0 | 6.84e-01 | 100.0% | 96.4% |
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.74 | 62.0 | 6.45e-01 | 97.3% | 100.0% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.72 | 53.0 | 5.06e-01 | 77.3% | 86.2% |
| 1rp5A03 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 62.0 | 5.87e-01 | 96.0% | 100.0% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 49.0 | 4.81e-01 | 80.0% | 68.3% |
| 3cedA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.69 | 62.0 | 5.64e-01 | 98.7% | 82.7% |
| 5ekcF01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.67 | 55.0 | 3.66e-01 | 89.3% | 52.9% |
| 2qmwA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.67 | 57.0 | 5.68e-01 | 93.3% | 100.0% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 48.0 | 4.59e-01 | 81.3% | 64.4% |
| 7o49B01 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 58.0 | 5.51e-01 | 100.0% | 95.6% |
| 3vouB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 48.0 | 3.91e-01 | 81.3% | 41.2% |
| 5t3dA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.66 | 53.0 | 4.07e-01 | 88.0% | 76.6% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 59.0 | 5.44e-01 | 100.0% | 83.5% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 46.0 | 4.20e-01 | 80.0% | 53.9% |
| 1t90A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.66 | 54.0 | 3.63e-01 | 89.3% | 56.8% |
| 3oc2A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.66 | 55.0 | 4.33e-01 | 100.0% | 42.2% |
| 1vbiA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.65 | 47.0 | 4.22e-01 | 76.0% | 98.1% |
| 2dy1A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.65 | 56.0 | 5.65e-01 | 98.7% | 94.7% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.65 | 51.0 | 5.30e-01 | 98.7% | 95.5% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 48.0 | 4.29e-01 | 80.0% | 60.2% |
| 7by3B01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.63 | 39.0 | 3.36e-01 | 82.7% | 41.2% |
| 7w5lA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.63 | 52.0 | 3.63e-01 | 92.0% | 62.6% |
| 3h5xA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.62 | 52.0 | 4.64e-01 | 98.7% | 80.2% |
| 4hvmB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.61 | 53.0 | 4.06e-01 | 100.0% | 80.3% |
| 2yxzA02 | 3.90.650.10 | Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain | 0.61 | 53.0 | 4.20e-01 | 100.0% | 87.7% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.60 | 47.0 | 4.65e-01 | 89.3% | 84.6% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.57 | 46.0 | 4.23e-01 | 86.7% | 94.7% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.56 | 38.0 | 4.30e-01 | 88.0% | 98.2% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.55 | 42.0 | 3.51e-01 | 84.0% | 57.4% |
| 1kxpD03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.55 | 45.0 | 4.28e-01 | 89.3% | 95.5% |
| 4kp1A01 | 3.30.499.10 | Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 | 0.52 | 38.0 | 2.67e-01 | 78.7% | 75.6% |
| 1v57A03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 39.0 | 3.21e-01 | 81.3% | 65.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3503894 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.84 | 76.0 | 7.47e-01 | 98.7% | 100.0% |
| 3540525 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.83 | 75.0 | 7.38e-01 | 98.7% | 100.0% |
| 4660026 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.83 | 76.0 | 7.05e-01 | 100.0% | 86.0% |
| 3791732 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.82 | 76.0 | 6.58e-01 | 100.0% | 80.0% |
| 435725 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.81 | 74.0 | 6.56e-01 | 100.0% | 76.2% |
| 4595959 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.80 | 73.0 | 7.13e-01 | 100.0% | 100.0% |
| 4398897 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.79 | 72.0 | 6.56e-01 | 100.0% | 81.6% |
| 3702846 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.79 | 67.0 | 6.93e-01 | 96.0% | 100.0% |
| 3196937 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.78 | 72.0 | 6.78e-01 | 100.0% | 83.3% |
| 3838034 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.78 | 70.0 | 6.60e-01 | 100.0% | 87.8% |
| 3406728 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.78 | 71.0 | 6.67e-01 | 100.0% | 98.9% |
| 4044190 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.78 | 71.0 | 6.48e-01 | 100.0% | 77.9% |
| 4320117 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.77 | 70.0 | 6.66e-01 | 100.0% | 85.2% |
| 3787090 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.76 | 70.0 | 6.10e-01 | 100.0% | 68.2% |
| 3594075 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.76 | 63.0 | 6.22e-01 | 93.3% | 86.3% |
| 3178235 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.74 | 67.0 | 6.35e-01 | 100.0% | 85.6% |
| 4935021 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.73 | 54.0 | 5.06e-01 | 77.3% | 86.7% |
| 3167139 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.73 | 66.0 | 5.94e-01 | 100.0% | 74.0% |
| 4162668 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.73 | 61.0 | 5.77e-01 | 97.3% | 77.5% |
| 4441776 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.73 | 65.0 | 6.33e-01 | 100.0% | 91.6% |
| 4994067 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.72 | 49.0 | 4.46e-01 | 80.0% | 53.0% |
| 4182238 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.72 | 63.0 | 6.09e-01 | 100.0% | 90.6% |
| 4028279 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.72 | 63.0 | 5.52e-01 | 100.0% | 67.0% |
| 5047519 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.72 | 63.0 | 6.24e-01 | 96.0% | 100.0% |
| 4547531 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.71 | 62.0 | 6.03e-01 | 100.0% | 88.2% |
| 4992616 | 304.165.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 | 0.71 | 66.0 | 5.20e-01 | 100.0% | 99.3% |
| 4023942 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.71 | 60.0 | 5.88e-01 | 97.3% | 86.3% |
| 3459019 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.71 | 50.0 | 4.32e-01 | 82.7% | 47.8% |
| 5009561 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.71 | 52.0 | 5.01e-01 | 78.7% | 68.2% |
| 5054544 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.70 | 50.0 | 4.69e-01 | 81.3% | 61.1% |
| 4643549 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.70 | 60.0 | 6.02e-01 | 98.7% | 94.7% |
| 4963322 | 304.165.1.2 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › BAT | 0.70 | 61.0 | 4.89e-01 | 94.7% | 98.6% |
| 3590710 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.69 | 62.0 | 5.76e-01 | 100.0% | 87.4% |
| 4196383 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.68 | 61.0 | 5.54e-01 | 100.0% | 81.0% |
| 3964951 | 308.2.1.0 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain | 0.64 | 55.0 | 5.58e-01 | 100.0% | 100.0% |
| 4933020 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.62 | 54.0 | 5.26e-01 | 100.0% | 87.1% |
| 3404835 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.61 | 47.0 | 3.95e-01 | 82.7% | 49.2% |
| 5041027 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 49.0 | 4.50e-01 | 85.3% | 89.5% |
| 5030717 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.61 | 53.0 | 5.24e-01 | 100.0% | 92.5% |
| 3231495 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.57 | 43.0 | 3.05e-01 | 81.3% | 49.6% |
| 3980780 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.56 | 41.0 | 3.92e-01 | 78.7% | 92.2% |
| 3946182 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.56 | 40.0 | 3.88e-01 | 78.7% | 92.2% |
| 5028844 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.55 | 48.0 | 4.83e-01 | 100.0% | 100.0% |
| 5047970 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.53 | 41.0 | 2.91e-01 | 85.3% | 38.8% |
| 3594142 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 37.0 | 3.36e-01 | 73.3% | 78.1% |
| 3454810 | 109.60.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › RPAP3 C-terminal domain-like › RPAP3 C-terminal domain-like | 0.52 | 36.0 | 2.89e-01 | 72.0% | 60.0% |