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AC1

Euk-Vir

Hemidesmus_yellow_mosaic_virus

AC1__YP_008411025__Hemidesmus_yellow_mosaic_virus__1383052

Identity

Accession:
YP_008411025 ↗
Protein ID:
AC1
Kingdom:
euk

Quality

79.9 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Geminiviridae› Begomovirus› Hemidesmus_yellow_mosaic_virus

TaxID: 1383052

Cluster

View cluster (491 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-114
PDB
Domain cluster: rep: replication-associated_protein__YP_009553348__Odonata-associated_circular_virus-7_Viruses.__X__D5-106
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00799.27 best Gemini_AL1 168.8 5.20e-50 100.0% 92.9%
D2 high residues 123-173
PDB
Domain cluster: rep: replication_initiator_protein__YP_009241413__Deinbollia_mosaic_virus__1812308__D128-173
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08283.17 best Gemini_AL1_M 38.4 1.60e-09 96.1% 32.7%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r70B01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.73 63.0 4.22e-01 98.0% 77.3%
3ci6B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.73 63.0 4.43e-01 98.0% 95.2%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.71 59.0 4.16e-01 96.1% 97.0%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.68 57.0 4.03e-01 98.0% 100.0%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.68 50.0 3.77e-01 80.4% 37.6%
1f5mA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 56.0 3.93e-01 100.0% 91.5%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.64 56.0 5.00e-01 100.0% 84.9%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.64 54.0 4.66e-01 98.0% 75.9%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.64 51.0 4.51e-01 100.0% 73.9%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.63 49.0 4.18e-01 88.2% 73.0%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.63 46.0 3.95e-01 92.2% 47.2%
3pvuA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.62 50.0 4.44e-01 96.1% 82.5%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.61 49.0 3.71e-01 92.2% 83.5%
1o0uA01 3.40.1480.10 Alpha Beta › 3-Layer(aba) Sandwich › glycerate kinase, domain 1 › MOFRL domain 0.61 51.0 3.55e-01 98.0% 95.7%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.61 47.0 3.83e-01 84.3% 47.5%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.61 47.0 3.35e-01 94.1% 70.4%
3pasA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 51.0 3.50e-01 98.0% 57.4%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.60 46.0 4.25e-01 96.1% 64.8%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.96e-01 92.2% 75.8%
2ii2A04 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.58 46.0 4.08e-01 92.2% 74.7%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 46.0 3.53e-01 100.0% 95.8%
2g3kA00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.58 47.0 4.01e-01 98.0% 85.1%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 46.0 4.31e-01 100.0% 87.3%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.57 42.0 4.05e-01 86.3% 82.5%
2jpnA00 1.20.1280.210 Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 0.56 47.0 4.15e-01 98.0% 73.4%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 43.0 4.22e-01 92.2% 98.3%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 46.0 3.97e-01 100.0% 94.5%
3kd4A02 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.56 42.0 3.17e-01 92.2% 66.3%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 3.96e-01 100.0% 65.4%
3cueB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.54 43.0 3.18e-01 100.0% 55.1%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 40.0 3.69e-01 94.1% 92.0%
5uivA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.84e-01 98.0% 36.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3719708 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 64.0 4.88e-01 94.1% 42.6%
4958656 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.71 61.0 3.81e-01 100.0% 19.7%
3737690 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.71 60.0 4.81e-01 98.0% 47.6%
4012688 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.70 58.0 4.70e-01 98.0% 46.7%
3497435 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.70 58.0 4.55e-01 98.0% 44.2%
3961415 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.70 59.0 3.68e-01 100.0% 19.0%
3889216 509.1.1.3 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › USH1C_N 0.69 56.0 5.08e-01 96.1% 70.7%
3960025 605.1.1.13 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Transposase_mut 0.69 58.0 4.74e-01 100.0% 55.2%
3961709 633.16.1.7 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › Transposase_mut 0.69 58.0 4.73e-01 100.0% 55.2%
3959683 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 58.0 3.66e-01 100.0% 19.7%
3473525 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 54.0 4.99e-01 88.2% 67.7%
3960578 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.69 56.0 4.65e-01 100.0% 51.4%
5002258 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.68 56.0 4.83e-01 92.2% 68.8%
4600279 316.1.1.9 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GlnE 0.68 60.0 3.70e-01 100.0% 26.6%
3506369 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.68 54.0 3.46e-01 100.0% 18.7%
5042947 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.67 51.0 5.22e-01 92.2% 88.0%
3016249 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.66 55.0 4.52e-01 96.1% 73.7%
4449496 3455.1.1.5 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › PexRD54_WY 0.65 56.0 4.77e-01 94.1% 75.0%
4324922 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.65 54.0 4.69e-01 98.0% 85.9%
3956733 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.65 52.0 3.33e-01 98.0% 19.3%
4939370 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 3.95e-01 86.3% 50.0%
4173843 532.2.1.1 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ 0.63 52.0 4.16e-01 96.1% 67.3%
3605601 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 50.0 4.27e-01 94.1% 66.7%
3239394 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.61 48.0 4.47e-01 96.1% 67.1%
5012498 3843.1.1.28 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MbhD 0.61 49.0 4.63e-01 92.2% 100.0%
4099504 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.59 47.0 4.62e-01 100.0% 98.3%
3370882 109.4.1.1683 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, PF30484 0.58 47.0 2.86e-01 94.1% 13.9%
4962481 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.57 45.0 3.28e-01 94.1% 94.7%
1503553 3796.1.1.1 ↗ alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Isd_H_B_linker 0.55 43.0 3.96e-01 100.0% 65.4%
D3 high residues 186-342
PDB
Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08283.17 best Gemini_AL1_M 41.5 1.70e-10 28.7% 42.1%