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AC3
Euk-VirTomato_leaf_curl_New_Delhi_virus_4
AC3__YP_009506535__Tomato_leaf_curl_New_Delhi_virus_4__2049944
Identity
- Accession:
- YP_009506535 ↗
- Protein ID:
- AC3
- Kingdom:
- euk
Quality
89.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Geminiviridae›
Begomovirus›
Tomato_leaf_curl_New_Delhi_virus_4
TaxID: 2049944
Cluster
View cluster (386 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-132
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01407.22 best | Gemini_AL3 | 119.1 | 1.40e-34 | 92.5% | 85.7% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yzcA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.68 | 54.0 | 4.09e-01 | 85.0% | 42.2% |
| 1nqnA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.68 | 37.0 | 3.75e-01 | 95.0% | 53.4% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 38.0 | 3.75e-01 | 94.2% | 53.4% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.64 | 53.0 | 4.18e-01 | 89.2% | 54.5% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 39.0 | 3.65e-01 | 94.2% | 51.4% |
| 8eisA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.61 | 42.0 | 3.55e-01 | 70.8% | 74.0% |
| 1of5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 37.0 | 3.44e-01 | 97.5% | 48.1% |
| 3hk4A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 32.0 | 3.24e-01 | 88.3% | 50.0% |
| 2f86B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 35.0 | 3.48e-01 | 91.7% | 52.7% |
| 1w7cA03 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 37.0 | 3.79e-01 | 98.3% | 65.2% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.59 | 40.0 | 3.81e-01 | 97.5% | 60.1% |
| 4uxuA00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.57 | 41.0 | 3.43e-01 | 74.2% | 68.1% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.57 | 41.0 | 3.79e-01 | 75.8% | 93.3% |
| 1e94A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 40.0 | 3.56e-01 | 72.5% | 99.4% |
| 3rgaA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 35.0 | 3.39e-01 | 95.0% | 54.1% |
| 3robA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 36.0 | 3.51e-01 | 96.7% | 58.0% |
| 2qgyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 47.0 | 4.54e-01 | 100.0% | 83.2% |
| 3d9rB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.83e-01 | 100.0% | 67.7% |
| 4hj1B03 | 2.60.40.3770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 36.0 | 4.09e-01 | 71.7% | 91.1% |
| 4jf8A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.54 | 37.0 | 3.47e-01 | 93.3% | 58.3% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 40.0 | 3.58e-01 | 84.2% | 57.7% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.51 | 37.0 | 3.78e-01 | 75.0% | 80.5% |
| 4l8hB00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 36.0 | 3.57e-01 | 71.7% | 86.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3515333 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 38.0 | 4.38e-01 | 94.2% | 78.9% |
| 3781163 | 230.1.1.4 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB | 0.64 | 47.0 | 4.71e-01 | 76.7% | 79.2% |
| 3591628 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 42.0 | 4.29e-01 | 100.0% | 74.8% |
| 3698353 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 35.0 | 3.46e-01 | 99.2% | 58.4% |
| 6405 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.54 | 39.0 | 3.84e-01 | 100.0% | 68.2% |
| 3608271 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 42.0 | 3.04e-01 | 100.0% | 29.3% |
| 3170490 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.53 | 41.0 | 3.31e-01 | 85.8% | 43.0% |
| 3781076 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.53 | 41.0 | 3.47e-01 | 85.8% | 50.3% |
| 3634501 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.51 | 40.0 | 3.36e-01 | 85.0% | 49.5% |
| 3728760 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.51 | 38.0 | 3.45e-01 | 100.0% | 57.0% |