AC3_protein

Euk-Vir

Lycianthes_yellow_mosaic_virus

AC3_protein__YP_009508370__Lycianthes_yellow_mosaic_virus__1779714

Identity

87.4 mean pLDDT

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Geminiviridae› Begomovirus› Lycianthes_yellow_mosaic_virus

TaxID: 1779714

View cluster (386 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-28_79-121

PDB

Domain cluster: rep: 15.9_kDa__NP_951036__Abutilon_mosaic_virus__10815__D15-32_79-116

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01407.22 best	Gemini_AL3	42.5	7.70e-11	60.6%	31.1%
PF01407.22	Gemini_AL3	29.3	9.50e-07	40.8%	21.0%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2oap202	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.62	45.0	3.04e-01	77.5%	96.8%
3vs8H00	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.56	48.0	3.11e-01	100.0%	61.7%
5weeB00	3.40.33.10	Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP	0.54	37.0	2.72e-01	70.4%	58.3%
1rykA00	1.10.1470.10	Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ	0.53	35.0	3.57e-01	80.3%	71.0%
1u69D00	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.53	38.0	3.07e-01	77.5%	51.0%
1n5uA02	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.51	43.0	4.02e-01	94.4%	92.2%
2kptA00	3.10.310.50	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 ›	0.51	43.0	3.51e-01	100.0%	80.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5017419	3355.1.1.2 ↗	alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › CitMHS	0.66	46.0	2.86e-01	71.8%	75.7%
5023504	2004.1.1.42 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE	0.59	43.0	2.65e-01	80.3%	55.2%
3393434	108.1.1.123 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_EFHB_C	0.59	49.0	4.63e-01	93.0%	80.0%
3234267	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.56	46.0	4.16e-01	93.0%	100.0%
5005388	3355.1.1.2 ↗	alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › CitMHS	0.52	41.0	2.71e-01	95.8%	57.7%
3253351	109.3.1.166 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3	0.51	37.0	2.59e-01	81.7%	53.4%
3225845	108.1.1.121 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30624	0.50	37.0	2.76e-01	78.9%	65.8%
3216865	108.1.1.96 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7	0.50	40.0	3.99e-01	93.0%	84.0%

D2 medium residues 29-78_122-134

PDB

Domain cluster: rep: AL2__YP_009506519__Tomato_bright_yellow_mottle_virus__858512__D73-147

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01407.22 best	Gemini_AL3	43.3	4.30e-11	100.0%	47.1%