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ACH96131.1_dnapol_B-like_protein
Euk-VirKallithea_virus
ACH96131.1_dnapol_B-like_protein__YP_009345924__Kallithea_virus__1654582
Identity
- Accession:
- YP_009345924 ↗
- Protein ID:
- ACH96131.1_dnapol_B-like_protein
- Kingdom:
- euk
Quality
57.2
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 254-499
Domain cluster:
rep: DNAPol__YP_009116659__Tipula_oleracea_nudivirus__1546257__D190-428
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03104.26 best | DNA_pol_B_exo1 | 38.0 | 1.70e-09 | 68.7% | 73.1% |
D2
medium
residues 605-623_1051-1116
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s5jA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.81 | 75.0 | 6.04e-01 | 100.0% | 98.1% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.70 | 52.0 | 4.94e-01 | 77.6% | 99.0% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.68 | 47.0 | 4.60e-01 | 72.9% | 95.8% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.67 | 51.0 | 4.54e-01 | 81.2% | 99.2% |
| 7e6gA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.66 | 58.0 | 4.77e-01 | 95.3% | 89.9% |
| 6d9mA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.66 | 57.0 | 4.66e-01 | 94.1% | 89.4% |
| 6zxbA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.64 | 55.0 | 4.62e-01 | 94.1% | 94.4% |
| 2cfxA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.63 | 45.0 | 4.47e-01 | 74.1% | 97.8% |
| 6eibD00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 55.0 | 4.52e-01 | 96.5% | 84.0% |
| 1mwyA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 44.0 | 4.70e-01 | 77.6% | 100.0% |
| 2f06A00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.60 | 45.0 | 3.82e-01 | 81.2% | 83.3% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 40.0 | 4.09e-01 | 72.9% | 98.8% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 36.0 | 3.53e-01 | 78.8% | 59.4% |
| 3n89A02 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.56 | 43.0 | 3.74e-01 | 84.7% | 87.6% |
| 3d68A01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.55 | 43.0 | 4.20e-01 | 83.5% | 91.3% |
| 2fqpA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 29.0 | 2.82e-01 | 77.6% | 42.1% |
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.55 | 47.0 | 3.75e-01 | 94.1% | 65.5% |
| 3bv8A00 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.52 | 39.0 | 3.92e-01 | 83.5% | 80.0% |
| 3jqwC00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 3.40e-01 | 78.8% | 59.5% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.50 | 39.0 | 3.43e-01 | 88.2% | 62.3% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4956224 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.88 | 82.0 | 5.77e-01 | 98.8% | 90.2% |
| 4461958 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.87 | 81.0 | 5.66e-01 | 100.0% | 82.1% |
| 4932480 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.86 | 78.0 | 5.66e-01 | 98.8% | 96.8% |
| 3801150 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.85 | 78.0 | 5.26e-01 | 100.0% | 81.4% |
| 5040510 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.84 | 79.0 | 5.50e-01 | 100.0% | 93.1% |
| 3582653 | 304.48.1.17 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2 | 0.79 | 73.0 | 5.51e-01 | 100.0% | 63.2% |
| 4321860 | 304.48.1.17 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2 | 0.73 | 67.0 | 5.10e-01 | 100.0% | 61.1% |
| 5043528 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.66 | 53.0 | 4.66e-01 | 84.7% | 84.2% |
| 4269228 | 304.122.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 | 0.64 | 45.0 | 4.18e-01 | 72.9% | 74.5% |
| 3442148 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.64 | 45.0 | 4.76e-01 | 72.9% | 100.0% |
| 4632150 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.64 | 45.0 | 4.39e-01 | 74.1% | 92.6% |
| 3333353 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.61 | 46.0 | 4.87e-01 | 80.0% | 98.7% |
| 3834404 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.60 | 45.0 | 3.76e-01 | 78.8% | 60.7% |
| 5062189 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.60 | 40.0 | 4.25e-01 | 70.6% | 100.0% |
| 3993299 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.59 | 44.0 | 4.24e-01 | 77.6% | 100.0% |
| 4929821 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.59 | 42.0 | 4.49e-01 | 75.3% | 100.0% |
| 3589327 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 43.0 | 4.45e-01 | 77.6% | 100.0% |
| 4942895 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 44.0 | 4.59e-01 | 82.4% | 100.0% |
| 3706132 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 41.0 | 4.18e-01 | 76.5% | 92.9% |
| 3666791 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 33.0 | 4.20e-01 | 75.3% | 100.0% |
| 3415300 | 304.28.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD | 0.57 | 43.0 | 2.59e-01 | 82.4% | 71.8% |
| 4938152 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.56 | 38.0 | 4.38e-01 | 75.3% | 100.0% |
| 4986600 | 304.8.1.12 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 | 0.55 | 43.0 | 3.90e-01 | 87.1% | 82.5% |
| 5046295 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 45.0 | 4.32e-01 | 91.8% | 88.0% |
| 5026454 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.54 | 39.0 | 4.33e-01 | 77.6% | 100.0% |
| 5020010 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.53 | 38.0 | 3.88e-01 | 75.3% | 88.2% |
| 5045299 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 44.0 | 3.85e-01 | 91.8% | 84.6% |
| 3585190 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.53 | 43.0 | 2.60e-01 | 90.6% | 53.6% |
| 5022659 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.52 | 32.0 | 3.36e-01 | 96.5% | 68.0% |
| 3289508 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.52 | 37.0 | 3.90e-01 | 76.5% | 84.0% |
| 4217703 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 43.0 | 4.15e-01 | 91.8% | 84.2% |
D3
medium
residues 719-765_959-1050
Domain cluster:
rep: DNApol_B__YP_009553377__Tomelloso_virus__2053981__D697-713_838-936