←Back to structures

ACH96172.1_lef-4-like_protein

Euk-Vir

Kallithea_virus

ACH96172.1_lef-4-like_protein__YP_009345982__Kallithea_virus__1654582

Identity

Accession:
YP_009345982 ↗
Protein ID:
ACH96172.1_lef-4-like_protein
Kingdom:
euk

Quality

75.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Kallithea_virus

TaxID: 1654582

Cluster

View cluster (54 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 87-239
PDB
Domain cluster: rep: LEF-4__YP_009051929__Penaeus_monodon_nudivirus__1529056__D14-178
D2 high residues 257-401
PDB
Domain cluster: rep: orf43_gene_product__YP_004956791__Helicoverpa_zea_nudivirus_2__1128424__D636-777
D3 high residues 403-472
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ckmA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.91 84.0 7.87e-01 98.6% 98.8%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.85 76.0 5.96e-01 95.7% 77.4%
3s24A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.85 77.0 6.92e-01 98.6% 98.9%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.84 74.0 5.86e-01 95.7% 96.3%
1p16B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.84 75.0 5.95e-01 97.1% 80.5%
3fvqA02 2.40.50.450 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 40.0 4.81e-01 90.0% 93.2%
1vemA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.79e-01 72.9% 84.0%
2ju5A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 39.0 3.30e-01 70.0% 79.8%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 31.0 3.19e-01 70.0% 56.1%
1z6nA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 38.0 2.90e-01 74.3% 63.3%
3q6oA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 38.0 3.42e-01 80.0% 77.7%
2m72A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 3.21e-01 88.6% 74.5%
1n8jA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 35.0 2.71e-01 74.3% 63.4%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 40.0 3.13e-01 90.0% 85.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3376913 2.1.1.28 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.87 78.0 6.54e-01 95.7% 80.0%
4527009 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 69.0 7.20e-01 92.9% 100.0%
4237702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 51.0 4.37e-01 91.4% 80.0%
4331761 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 51.0 4.29e-01 94.3% 75.7%
4493460 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 51.0 4.40e-01 95.7% 74.5%
4411951 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 51.0 4.10e-01 97.1% 62.2%
3832789 2485.1.1.34 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.56 44.0 4.16e-01 87.1% 88.6%
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 3.93e-01 100.0% 73.3%
4951344 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 48.0 4.04e-01 97.1% 73.9%
4007792 10.12.1.115 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.52 43.0 3.47e-01 90.0% 95.6%
3908016 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.51 38.0 3.79e-01 80.0% 76.0%
3376744 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.36e-01 92.9% 52.4%