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ACH96181.1_rr1-like_protein

Euk-Vir

Kallithea_virus

ACH96181.1_rr1-like_protein__YP_009345987__Kallithea_virus__1654582

Identity

Accession:
YP_009345987 ↗
Protein ID:
ACH96181.1_rr1-like_protein
Kingdom:
euk

Quality

70.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Kallithea_virus

TaxID: 1654582

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 235-408
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1st6A02 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.51 43.0 3.88e-01 90.2% 94.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3725619 2004.1.1.366 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N 0.53 44.0 3.64e-01 88.5% 85.8%
D2 medium residues 435-501
PDB
Domain cluster: rep: rr1__YP_009553415__Tomelloso_virus__2053981__D179-244
D3 medium residues 752-773_866-923
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6e94A02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 22.0 2.60e-01 91.3% 39.3%
1a1iA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.50 21.0 2.89e-01 91.3% 73.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4298539 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.72 65.0 3.90e-01 100.0% 36.6%
4067125 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.70 64.0 3.85e-01 100.0% 34.3%
5057901 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.52 24.0 2.93e-01 75.0% 64.0%