←Back to structures

ACH96194.1_lef-8-like_protein

Euk-Vir

Kallithea_virus

ACH96194.1_lef-8-like_protein__YP_009345992__Kallithea_virus__1654582

Identity

Accession:
YP_009345992 ↗
Protein ID:
ACH96194.1_lef-8-like_protein
Kingdom:
euk

Quality

48.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Kallithea_virus

TaxID: 1654582

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 77-161
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 40.0 3.51e-01 88.2% 68.7%
1ioxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.50 29.0 3.42e-01 98.8% 92.0%
D2 high residues 391-476
PDB
Domain cluster: rep: lef-8__YP_009553422__Tomelloso_virus__2053981__D332-416
D3 high residues 649-681_791-870
PDB
Domain cluster: rep: RNA_polymerase_subunit_RPO132__YP_009046186__Penguinpox_virus__648998__D714-766_870-915_991-1015
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfB06 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.83 78.0 6.12e-01 100.0% 80.3%
1hqmC01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.82 77.0 6.04e-01 100.0% 93.1%
1cr5A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.79 52.0 6.20e-01 99.1% 98.7%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.78 54.0 6.25e-01 98.2% 97.6%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 54.0 5.79e-01 99.1% 85.4%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.63 50.0 5.43e-01 96.5% 99.0%
1y5lA02 3.40.50.12440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 55.0 3.12e-01 100.0% 12.1%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 52.0 5.08e-01 100.0% 86.4%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 48.0 5.08e-01 99.1% 98.0%
1h0hA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 54.0 4.61e-01 99.1% 73.9%
1q16A13 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 54.0 4.89e-01 100.0% 78.0%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 53.0 4.69e-01 98.2% 79.9%
1ti2A04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 53.0 4.72e-01 99.1% 89.0%
ECOD (89)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3613807 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.84 79.0 6.71e-01 100.0% 93.1%
4024674 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.84 79.0 6.16e-01 100.0% 95.6%
4636141 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.84 79.0 6.61e-01 100.0% 93.9%
4148017 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.84 79.0 6.17e-01 100.0% 95.5%
4946077 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.84 79.0 6.90e-01 100.0% 95.6%
3600872 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 78.0 6.77e-01 100.0% 95.8%
4655578 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.83 78.0 6.02e-01 100.0% 95.2%
4167437 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.83 78.0 6.34e-01 100.0% 95.4%
4492078 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.83 78.0 5.84e-01 100.0% 95.2%
4118150 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.82 77.0 6.70e-01 100.0% 93.9%
4039119 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.82 77.0 5.81e-01 100.0% 96.0%
4026622 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.82 77.0 6.48e-01 100.0% 92.2%
4921633 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.81 76.0 6.07e-01 99.1% 95.6%
3602941 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 55.0 6.33e-01 99.1% 96.5%
4171290 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.78 54.0 6.18e-01 98.2% 95.3%
5037727 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 54.0 6.18e-01 98.2% 95.3%
4108919 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 54.0 6.17e-01 98.2% 95.3%
4970929 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 55.0 6.25e-01 99.1% 97.6%
4954799 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.77 56.0 6.09e-01 100.0% 90.5%
4027677 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 55.0 6.25e-01 100.0% 98.8%
3486347 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 55.0 5.95e-01 100.0% 88.4%
4888118 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.76 70.0 6.13e-01 97.3% 93.1%
4902571 1.1.2.32 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 0.76 70.0 6.13e-01 97.3% 93.1%
4488210 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.76 53.0 6.07e-01 98.2% 95.3%
4241168 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 53.0 6.16e-01 98.2% 100.0%
4986590 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 53.0 6.04e-01 98.2% 95.3%
3514644 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.76 55.0 6.13e-01 100.0% 94.4%
5076635 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 54.0 6.17e-01 99.1% 97.6%
4946804 1.1.2.44 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Glycos_trans_3N 0.76 54.0 6.15e-01 99.1% 97.6%
4931749 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 53.0 6.08e-01 98.2% 96.5%
5066567 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.76 54.0 5.90e-01 98.2% 88.4%
4948370 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.76 55.0 5.13e-01 100.0% 61.6%
4977163 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 53.0 5.90e-01 100.0% 92.0%
5001485 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.76 53.0 6.04e-01 98.2% 96.5%
5044689 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 57.0 5.69e-01 77.9% 92.2%
4097451 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.75 55.0 6.22e-01 100.0% 100.0%
4967302 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 55.0 6.04e-01 100.0% 94.4%
1883479 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.75 55.0 6.04e-01 100.0% 94.4%
4963913 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 50.0 5.88e-01 98.2% 96.2%
4995354 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 54.0 6.09e-01 98.2% 97.6%
4943103 1.1.2.45 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 0.75 54.0 6.12e-01 98.2% 98.8%
4445483 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.75 53.0 5.99e-01 98.2% 96.5%
4263053 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 53.0 5.98e-01 98.2% 96.5%
3195760 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.75 53.0 5.82e-01 100.0% 91.1%
4446061 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 50.0 5.79e-01 96.5% 96.2%
4938645 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.75 53.0 5.94e-01 97.3% 96.5%
5060748 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 55.0 5.57e-01 100.0% 78.2%
4979696 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 53.0 5.97e-01 98.2% 97.6%
3611762 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.75 54.0 5.87e-01 100.0% 89.5%
4526788 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.74 51.0 5.96e-01 97.3% 98.8%
5028227 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 53.0 6.10e-01 98.2% 98.8%
5053004 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 55.0 5.40e-01 77.9% 90.8%
4927622 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.73 54.0 5.93e-01 100.0% 96.7%
5006472 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 50.0 5.83e-01 94.7% 100.0%
5058808 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 54.0 5.33e-01 77.9% 89.2%
4946746 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 55.0 5.58e-01 78.8% 89.1%
3677222 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.72 68.0 6.06e-01 100.0% 94.7%
4024752 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 50.0 5.32e-01 100.0% 83.0%
4930160 1.1.2.20 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central 0.71 52.0 4.86e-01 75.2% 83.7%
3725766 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 54.0 5.80e-01 99.1% 94.7%
31 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.70 51.0 5.61e-01 100.0% 94.5%
4654643 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 52.0 5.53e-01 81.4% 87.0%
3391395 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 55.0 5.80e-01 100.0% 93.0%
4201122 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 54.0 5.64e-01 90.3% 87.6%
4412884 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 52.0 5.51e-01 92.9% 88.0%
3278346 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 54.0 5.73e-01 81.4% 95.0%
5078460 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 53.0 5.09e-01 79.6% 91.2%
3993834 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 56.0 5.86e-01 100.0% 93.3%
5077212 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 53.0 5.09e-01 81.4% 90.8%
4032855 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 51.0 5.44e-01 78.8% 89.0%
4944559 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 55.0 5.10e-01 85.8% 92.9%
4944557 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 59.0 5.37e-01 92.9% 91.0%
4358683 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 49.0 5.02e-01 77.0% 100.0%
4486888 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 49.0 5.38e-01 92.0% 96.7%
4993187 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.65 50.0 5.33e-01 81.4% 94.0%
4200338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 52.0 5.41e-01 100.0% 92.4%
3384940 1.1.2.24 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › KWL1 0.64 55.0 5.37e-01 100.0% 84.0%
4975555 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.63 56.0 5.57e-01 100.0% 90.8%
4936180 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.63 55.0 5.42e-01 100.0% 88.1%
4978464 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.63 54.0 5.39e-01 98.2% 89.6%
4938597 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.63 56.0 5.54e-01 100.0% 90.0%
4960290 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.62 47.0 4.93e-01 79.6% 97.1%
4950319 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.62 55.0 5.23e-01 98.2% 82.9%
3576914 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.61 29.0 3.26e-01 100.0% 57.6%
4989870 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.60 55.0 4.46e-01 100.0% 61.9%
4985608 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 54.0 4.79e-01 99.1% 81.9%
5082183 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 48.0 5.06e-01 91.2% 98.0%
3989467 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 46.0 4.79e-01 92.9% 91.4%
3588794 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 51.0 4.61e-01 100.0% 74.7%
D4 high residues 683-788
PDB
D5 medium residues 167-276_291-303
PDB
D6 medium residues 547-557_590-646
PDB