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ACH96238.1_dnahel_2-like_protein

Euk-Vir

Kallithea_virus

ACH96238.1_dnahel_2-like_protein__YP_009345947__Kallithea_virus__1654582

Identity

Accession:
YP_009345947 ↗
Protein ID:
ACH96238.1_dnahel_2-like_protein
Kingdom:
euk

Quality

59.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Kallithea_virus

TaxID: 1654582

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 160-286
PDB
Domain cluster: rep: helicase_2__YP_010087709__Homarus_gammarus_nudivirus__2509616__D65-75_135-230
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sxjE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 43.0 3.95e-01 78.7% 50.0%
1iqpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 40.0 3.63e-01 82.7% 49.4%
2gnoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 37.0 3.69e-01 78.0% 56.6%
5nnnA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.60 38.0 3.50e-01 74.8% 49.7%
1a5kC02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.59 44.0 3.18e-01 78.7% 74.0%
2vy9A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.57 37.0 3.95e-01 81.1% 73.7%
1mabA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 3.24e-01 78.7% 96.5%
2y8kA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 42.0 3.19e-01 81.1% 35.7%
2imrA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 47.0 3.50e-01 91.3% 52.1%
3px5A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.54 41.0 3.28e-01 78.7% 42.7%
7oh2A01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.53 37.0 2.83e-01 73.2% 44.6%
3d03A01 3.60.21.40 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › GpdQ, catalytic alpha/beta sandwich domain 0.53 36.0 3.61e-01 81.9% 67.9%
3fniA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 36.0 3.38e-01 84.3% 57.1%
2vxoA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 39.0 3.33e-01 80.3% 97.7%
6bwcB02 3.90.25.30 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › Polysaccharide biosynthesis protein, CapD-like domain 0.51 27.0 3.10e-01 75.6% 68.5%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 3.68e-01 83.5% 92.8%
1d2kA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 45.0 3.40e-01 100.0% 60.8%
1xngA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 39.0 3.18e-01 82.7% 75.3%
5dqpB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.50 37.0 2.63e-01 77.2% 52.6%
2c42A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.50 40.0 3.19e-01 85.0% 47.1%
7wwfA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 40.0 3.20e-01 86.6% 80.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4769259 2004.1.1.363 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.72 61.0 5.79e-01 100.0% 76.8%
4182689 2004.1.1.205 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_30 0.68 50.0 4.10e-01 74.8% 90.7%
4950384 2004.1.1.187 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.68 46.0 4.03e-01 89.8% 48.3%
5041967 2004.1.1.187 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.67 42.0 4.69e-01 78.7% 80.0%
3588920 2004.1.1.28 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK 0.66 41.0 4.01e-01 80.3% 56.4%
4943294 2004.1.1.187 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.65 43.0 3.93e-01 84.3% 52.5%
3603741 2004.1.1.187 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.65 40.0 3.82e-01 82.7% 52.7%
None — 0.65 42.0 3.91e-01 82.7% 53.5%
4973004 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.64 41.0 4.25e-01 85.0% 68.3%
3695548 2004.1.1.425 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, DUF815 0.58 42.0 3.65e-01 77.2% 51.7%
3578138 2002.1.1.96 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › S-methyl_trans 0.58 43.0 3.82e-01 77.2% 81.7%
4406156 2004.1.1.205 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_30 0.58 47.0 3.66e-01 86.6% 74.3%
4415067 2002.1.1.8 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase 0.55 42.0 2.86e-01 79.5% 44.8%
4931895 2004.1.1.187 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.55 43.0 3.69e-01 82.7% 54.2%
4952580 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.55 44.0 3.62e-01 87.4% 76.2%
5075774 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 45.0 3.89e-01 93.7% 72.5%
5040666 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 41.0 3.04e-01 85.8% 56.5%
3665275 2004.1.1.187 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.51 40.0 3.45e-01 84.3% 60.0%
3343652 2004.1.1.148 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ORC3_N 0.51 38.0 3.18e-01 79.5% 48.0%
D2 medium residues 287-325_481-550
PDB
Domain cluster: rep: helicase_2__YP_010087709__Homarus_gammarus_nudivirus__2509616__D258-315_421-469
D3 medium residues 326-338_404-453
PDB