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ADP-ribosyl_glycohydrolase
Euk-VirPithovirus_sibericum
ADP-ribosyl_glycohydrolase__YP_009001020__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009001020 ↗
- Protein ID:
- ADP-ribosyl_glycohydrolase
- Kingdom:
- euk
Quality
75.8
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-30_150-298
Domain cluster:
rep: putative_ADP-ribosyl_glycohydrolase__YP_003987058__Acanthamoeba_polyphaga_mimivirus__212035__D1-24_126-294
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03747.20 best | ADP_ribosyl_GH | 55.0 | 1.50e-14 | 78.8% | 50.5% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yzvA00 | 1.10.4080.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 | 0.84 | 77.0 | 6.43e-01 | 96.1% | 92.7% |
| 7cj3A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 41.0 | 3.60e-01 | 79.3% | 88.4% |
| 6wb9201 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 41.0 | 3.54e-01 | 82.1% | 53.6% |
| 1qqfA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 42.0 | 3.70e-01 | 89.4% | 96.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014369 | 528.1.1.0 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase | 0.85 | 79.0 | 6.15e-01 | 96.1% | 95.7% |
| 3180901 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.85 | 80.0 | 6.05e-01 | 97.8% | 95.3% |
| 5065847 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.83 | 75.0 | 6.21e-01 | 94.4% | 92.8% |
D2
medium
residues 31-149
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03747.20 best | ADP_ribosyl_GH | 50.5 | 3.50e-13 | 92.4% | 32.4% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t5jA00 | 1.10.4080.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 | 0.68 | 53.0 | 3.88e-01 | 81.5% | 96.0% |
| 2wocA00 | 1.10.4080.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 | 0.63 | 58.0 | 4.26e-01 | 98.3% | 93.1% |
| 3dplC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 35.0 | 4.03e-01 | 75.6% | 78.3% |
| 1ui6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 41.0 | 3.59e-01 | 86.6% | 68.2% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 44.0 | 4.21e-01 | 95.0% | 81.4% |
| 2ijqA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.51 | 38.0 | 3.62e-01 | 78.2% | 88.3% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 39.0 | 4.22e-01 | 99.2% | 100.0% |
| 2nnwA01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 36.0 | 3.63e-01 | 73.9% | 82.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981312 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.77 | 62.0 | 4.54e-01 | 84.0% | 45.2% |
| 3991110 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.69 | 65.0 | 4.59e-01 | 100.0% | 84.0% |
| 4000377 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.68 | 63.0 | 4.48e-01 | 100.0% | 42.1% |
| 3222278 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.67 | 54.0 | 4.20e-01 | 85.7% | 94.1% |
| 4994742 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.63 | 58.0 | 4.25e-01 | 99.2% | 94.1% |
| 4969961 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.63 | 26.0 | 3.11e-01 | 72.3% | 52.9% |
| 3819682 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 36.0 | 4.41e-01 | 74.8% | 89.3% |
| 4587567 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.62 | 57.0 | 4.18e-01 | 99.2% | 94.7% |
| 3630023 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.60 | 47.0 | 3.71e-01 | 84.9% | 85.6% |
| 3236724 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 3.88e-01 | 74.8% | 77.1% |
| 3729092 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.52 | 44.0 | 3.80e-01 | 94.1% | 61.5% |
| 5073852 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 39.0 | 3.93e-01 | 99.2% | 80.0% |
| 3739922 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 43.0 | 4.10e-01 | 95.8% | 78.6% |