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AF020713.1__AAC12978.1__X__00005

Bact-Vir

AF020713.1__AAC12978.1__X__00005

Identity

Accession:
AF020713 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-98
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14470.13 best bPH_3 30.2 7.00e-07 50.0% 47.9%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.66 42.0 3.90e-01 86.7% 50.0%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 53.0 3.61e-01 99.0% 44.5%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 50.0 3.47e-01 94.9% 35.7%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 49.0 3.44e-01 94.9% 36.6%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 32.0 3.85e-01 80.6% 82.5%
4bjjB00 2.60.40.4370 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 4.15e-01 70.4% 88.2%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.40e-01 88.8% 61.6%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 47.0 3.39e-01 99.0% 47.1%
1n7vA01 2.105.10.10 Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller 0.53 43.0 3.57e-01 87.8% 49.7%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.20e-01 90.8% 70.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 32.0 3.78e-01 73.5% 92.4%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 43.0 3.34e-01 92.9% 52.7%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.50 38.0 3.15e-01 79.6% 70.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014255 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.73 43.0 3.84e-01 85.7% 43.0%
3252105 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 45.0 4.38e-01 98.0% 56.4%
3176453 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 48.0 4.24e-01 99.0% 52.9%
3265666 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 55.0 3.43e-01 100.0% 39.5%
3271779 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 3.80e-01 100.0% 50.3%
3591928 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.26e-01 99.0% 22.7%
4584262 3222.1.1.1 a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory 0.60 47.0 3.39e-01 86.7% 43.2%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 52.0 3.44e-01 99.0% 30.2%
3388479 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.53e-01 98.0% 38.1%
3781119 5.1.4.97 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.58 51.0 3.35e-01 100.0% 31.5%
3238592 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.57 51.0 3.34e-01 100.0% 48.0%
4964966 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.57 47.0 4.05e-01 89.8% 75.5%
3061935 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.57 40.0 4.07e-01 86.7% 73.7%
4025288 5.1.3.160 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.57 50.0 3.32e-01 99.0% 47.5%
3219425 5.1.3.238 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.55 46.0 4.26e-01 89.8% 72.8%
4013323 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 45.0 3.01e-01 88.8% 29.9%
5049323 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.53 32.0 2.77e-01 79.6% 36.5%
3886769 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 46.0 3.24e-01 100.0% 41.9%
5075592 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 38.0 3.27e-01 79.6% 71.5%
4027205 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.51 45.0 3.19e-01 100.0% 36.1%
3585370 5.1.3.112 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40_2 0.51 45.0 3.44e-01 100.0% 98.8%
D2 medium residues 99-160
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14470.13 best bPH_3 25.3 2.40e-05 95.2% 48.9%
CATH (79)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 67.0 5.64e-01 100.0% 57.7%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 64.0 4.97e-01 100.0% 43.4%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.75 65.0 5.19e-01 98.4% 49.6%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 60.0 4.77e-01 100.0% 44.4%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.74 49.0 3.43e-01 77.4% 21.9%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 59.0 4.70e-01 100.0% 43.3%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 45.0 3.93e-01 79.0% 42.1%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.69 48.0 4.96e-01 77.4% 75.0%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.69 58.0 4.81e-01 98.4% 53.2%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.67 46.0 4.66e-01 77.4% 71.4%
3qvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.67 47.0 3.99e-01 72.6% 87.1%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 57.0 4.73e-01 98.4% 59.0%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.67 44.0 3.11e-01 82.3% 21.3%
1p1jA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.66 47.0 3.86e-01 75.8% 87.8%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 56.0 4.43e-01 96.8% 76.5%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 48.0 3.86e-01 77.4% 76.5%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 57.0 4.67e-01 100.0% 80.5%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.65 46.0 3.92e-01 75.8% 67.6%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 46.0 2.99e-01 75.8% 17.0%
3cinA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.65 46.0 3.96e-01 75.8% 87.5%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 47.0 4.65e-01 88.7% 73.8%
6k96B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.65 46.0 4.05e-01 77.4% 84.5%
1gr0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.64 46.0 4.24e-01 77.4% 82.1%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.64 55.0 3.97e-01 100.0% 86.8%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.63 41.0 4.15e-01 85.5% 66.1%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 46.0 4.78e-01 77.4% 85.7%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 53.0 3.60e-01 96.8% 40.6%
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.62 54.0 3.80e-01 100.0% 82.6%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.62 45.0 3.61e-01 77.4% 53.2%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 51.0 3.60e-01 95.2% 48.8%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 52.0 4.66e-01 96.8% 92.2%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 43.0 3.42e-01 74.2% 34.3%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 52.0 4.14e-01 96.8% 71.3%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 3.57e-01 80.6% 72.8%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 47.0 4.70e-01 91.9% 81.2%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.61 42.0 4.36e-01 77.4% 78.0%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 51.0 4.16e-01 98.4% 82.8%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 43.0 3.81e-01 75.8% 71.0%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 45.0 3.23e-01 79.0% 42.8%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 52.0 4.20e-01 98.4% 79.7%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.60 53.0 4.11e-01 98.4% 91.9%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 50.0 3.85e-01 93.5% 90.4%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 43.0 3.68e-01 77.4% 72.5%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 46.0 3.51e-01 85.5% 67.1%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 50.0 3.67e-01 100.0% 41.0%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 49.0 4.01e-01 91.9% 56.9%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 4.46e-01 88.7% 74.7%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.59 41.0 3.51e-01 75.8% 42.6%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 3.91e-01 100.0% 59.1%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 39.0 3.24e-01 77.4% 35.8%
4ak1A02 2.30.30.1270 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.20e-01 79.0% 75.0%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.58 40.0 3.38e-01 74.2% 42.5%
1g7eA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 46.0 3.72e-01 88.7% 81.1%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.58 43.0 3.38e-01 80.6% 80.0%
4aq1A02 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 42.0 3.70e-01 77.4% 79.1%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.57 42.0 3.51e-01 83.9% 84.1%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.57 40.0 3.38e-01 75.8% 43.4%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 4.07e-01 91.9% 94.8%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.57 46.0 4.02e-01 96.8% 98.1%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 45.0 3.12e-01 91.9% 24.3%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.56 40.0 3.38e-01 75.8% 44.5%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 47.0 3.26e-01 98.4% 28.1%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 41.0 3.14e-01 79.0% 85.6%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.45e-01 85.5% 50.0%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.55 46.0 3.53e-01 100.0% 67.1%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 36.0 3.19e-01 83.9% 44.9%
1a66A00 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.54 38.0 2.84e-01 77.4% 69.7%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.52 42.0 3.81e-01 96.8% 99.0%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 2.93e-01 98.4% 32.6%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 2.96e-01 85.5% 71.8%
1rm6A03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 36.0 2.96e-01 75.8% 35.6%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 2.77e-01 96.8% 46.3%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.01e-01 79.0% 85.0%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 41.0 2.60e-01 91.9% 93.0%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.51 41.0 3.24e-01 98.4% 46.0%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.51 42.0 3.35e-01 98.4% 70.3%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.50 38.0 2.70e-01 85.5% 27.9%
8egxA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 40.0 3.50e-01 91.9% 94.1%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.63e-01 96.8% 70.6%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4338151 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.94 91.0 6.58e-01 100.0% 42.8%
3183690 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 67.0 4.99e-01 100.0% 38.0%
3244742 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.78 64.0 4.10e-01 91.9% 20.3%
3403443 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.77 56.0 3.37e-01 77.4% 14.6%
3230613 3755.3.1.410 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Nup88 0.76 57.0 3.29e-01 79.0% 19.6%
4003604 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 69.0 5.73e-01 100.0% 61.9%
3516854 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 59.0 4.82e-01 100.0% 47.0%
3571085 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 65.0 5.21e-01 100.0% 55.2%
3388914 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.74 55.0 3.30e-01 79.0% 14.4%
3391707 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.73 58.0 3.23e-01 85.5% 14.2%
3992484 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 64.0 5.20e-01 100.0% 70.0%
3898198 220.1.1.184 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.72 66.0 5.15e-01 100.0% 52.0%
3720410 220.1.1.57 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.72 60.0 4.63e-01 100.0% 42.2%
3401155 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.72 57.0 3.41e-01 85.5% 26.8%
4593266 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.72 59.0 5.58e-01 100.0% 76.0%
3706741 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.71 53.0 3.51e-01 79.0% 30.6%
4947993 283.2.1.19 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › NMD3 0.71 53.0 4.35e-01 79.0% 47.3%
4998370 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.71 47.0 3.18e-01 74.2% 17.9%
3678038 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.71 57.0 5.39e-01 98.4% 73.3%
3667340 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.70 59.0 4.72e-01 98.4% 46.4%
3932851 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.70 63.0 5.04e-01 100.0% 51.7%
5084021 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.70 49.0 4.19e-01 74.2% 45.9%
3513463 283.2.1.10 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29514 0.69 48.0 3.74e-01 72.6% 62.3%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.69 58.0 5.36e-01 93.5% 72.5%
3504767 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.69 51.0 4.94e-01 90.3% 70.0%
3272624 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.69 56.0 4.41e-01 96.8% 43.1%
3612951 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.68 46.0 4.40e-01 74.2% 58.7%
4929364 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.68 56.0 5.58e-01 95.2% 87.7%
3858981 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.68 59.0 5.73e-01 100.0% 98.6%
3356898 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.68 59.0 4.47e-01 98.4% 77.3%
3382312 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.67 58.0 3.82e-01 100.0% 26.1%
3681185 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.67 55.0 3.62e-01 88.7% 22.9%
3409738 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.67 48.0 4.80e-01 83.9% 73.8%
3854465 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.66 48.0 3.81e-01 77.4% 39.2%
3714794 375.3.1.0 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger 0.66 45.0 4.05e-01 74.2% 51.8%
3673251 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.66 56.0 4.10e-01 98.4% 34.3%
2780879 1172.1.1.1 beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 0.65 46.0 3.80e-01 74.2% 44.1%
1900709 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.65 47.0 3.14e-01 77.4% 78.9%
3396774 220.1.1.168 beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.65 55.0 4.65e-01 98.4% 67.3%
3989865 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.65 47.0 3.14e-01 77.4% 79.0%
1824160 395.1.1.2 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › PTN_MK_N 0.65 42.0 4.24e-01 75.8% 64.1%
5038844 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.65 54.0 4.95e-01 91.9% 72.5%
3407706 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.64 47.0 2.89e-01 79.0% 27.6%
3216163 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 53.0 4.62e-01 91.9% 68.4%
3526482 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.64 43.0 3.71e-01 71.0% 84.8%
4938125 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.64 56.0 5.07e-01 100.0% 85.9%
5035423 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 41.0 3.72e-01 79.0% 48.2%
3451705 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.62 45.0 3.47e-01 75.8% 73.6%
3255279 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 3.07e-01 93.5% 25.9%
4995515 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.62 49.0 3.38e-01 85.5% 33.3%
2060725 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 43.0 4.10e-01 74.2% 84.0%
5075779 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 41.0 3.88e-01 71.0% 58.7%
3033596 5.1.4.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd 0.61 44.0 4.15e-01 77.4% 62.8%
4089593 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.61 52.0 4.12e-01 96.8% 84.6%
3719842 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.61 49.0 3.18e-01 98.4% 19.0%
3342794 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 52.0 4.59e-01 95.2% 77.8%
3662007 2003.1.1.283 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Inos-1-P_synth 0.61 50.0 3.42e-01 91.9% 63.1%
4927342 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 51.0 4.65e-01 100.0% 90.0%
3701547 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.60 49.0 3.61e-01 91.9% 80.0%
3971508 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.60 43.0 3.10e-01 75.8% 30.0%
3206632 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.60 50.0 4.65e-01 100.0% 84.7%
3928618 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 48.0 4.05e-01 91.9% 52.4%
3786132 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.60 50.0 3.81e-01 91.9% 42.1%
4986795 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.59 49.0 3.71e-01 96.8% 58.2%
4593431 223.1.1.67 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7 0.59 42.0 3.00e-01 77.4% 88.1%
3597976 2484.8.1.0 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.59 49.0 3.50e-01 98.4% 61.9%
3948266 223.1.1.67 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7 0.59 42.0 3.02e-01 75.8% 96.2%
146266 295.1.1.8 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 0.59 47.0 4.30e-01 90.3% 67.9%
3487630 2484.1.1.170 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ZSWIM1-3_RNaseH-like 0.59 49.0 3.39e-01 100.0% 27.3%
3710325 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 48.0 4.47e-01 91.9% 78.8%
3433324 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.58 48.0 3.01e-01 95.2% 33.6%
5053329 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 44.0 3.66e-01 93.5% 44.2%
1944087 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.58 46.0 3.86e-01 91.9% 51.7%
3206409 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 47.0 3.57e-01 93.5% 37.5%
4996571 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.57 41.0 3.30e-01 77.4% 97.0%
3406575 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.57 46.0 2.93e-01 100.0% 38.0%
3917310 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 44.0 4.43e-01 90.3% 87.7%
4177430 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.56 46.0 3.61e-01 98.4% 93.3%
3628462 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 41.0 4.16e-01 82.3% 83.3%
4989982 244.2.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.55 45.0 3.66e-01 93.5% 68.8%
3285634 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 4.03e-01 98.4% 65.6%
3596304 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 45.0 4.23e-01 96.8% 78.8%
4957055 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.55 41.0 3.89e-01 85.5% 69.3%
4943626 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.54 42.0 3.41e-01 85.5% 46.7%
5041316 5.1.4.664 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_2 0.53 46.0 2.89e-01 100.0% 25.5%
5004462 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.51 42.0 3.82e-01 100.0% 97.8%