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AF069529.1__AAF31110.1__X__00019

Bact-Vir

AF069529.1__AAF31110.1__X__00019

Identity

Accession:
AF069529 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-82
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.72 37.0 2.77e-01 70.4% 20.4%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.64 48.0 3.52e-01 98.8% 28.0%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 50.0 3.83e-01 100.0% 36.7%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.64 57.0 4.47e-01 100.0% 85.4%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.63 46.0 3.62e-01 97.5% 37.2%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 48.0 4.32e-01 93.8% 58.9%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.63 52.0 4.27e-01 100.0% 49.7%
3cfuA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 55.0 4.57e-01 100.0% 78.5%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 54.0 4.65e-01 100.0% 88.4%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 35.0 2.90e-01 72.8% 32.6%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.60 52.0 3.96e-01 100.0% 49.3%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.59 52.0 4.47e-01 100.0% 72.0%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 50.0 4.06e-01 100.0% 86.6%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 45.0 2.91e-01 100.0% 17.5%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.57 46.0 2.95e-01 88.9% 80.4%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 48.0 4.14e-01 100.0% 56.9%
7neaA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.57 39.0 3.41e-01 70.4% 84.3%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 40.0 2.77e-01 72.8% 46.4%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 49.0 4.16e-01 98.8% 70.9%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.57 46.0 4.13e-01 87.7% 100.0%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 48.0 4.35e-01 93.8% 78.2%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 50.0 4.46e-01 100.0% 82.9%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 48.0 4.16e-01 100.0% 85.3%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 47.0 4.02e-01 93.8% 86.8%
3pcoB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 38.0 2.86e-01 72.8% 89.5%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 47.0 3.81e-01 98.8% 67.5%
1r4sA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.55 45.0 3.12e-01 92.6% 44.6%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 46.0 4.13e-01 93.8% 77.4%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 45.0 3.70e-01 100.0% 97.7%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 4.03e-01 93.8% 68.6%
2iqiB00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.54 46.0 3.72e-01 100.0% 80.1%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.54 48.0 3.95e-01 100.0% 54.7%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 4.09e-01 93.8% 74.8%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 46.0 4.17e-01 100.0% 79.6%
3i1iB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 45.0 2.97e-01 97.5% 97.6%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 44.0 3.82e-01 96.3% 90.2%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.52 45.0 3.27e-01 100.0% 64.6%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 40.0 4.12e-01 98.8% 90.9%
1ayrB02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 2.87e-01 72.8% 69.5%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 33.0 2.85e-01 74.1% 36.6%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.14e-01 93.8% 47.3%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 34.0 2.87e-01 72.8% 37.3%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 43.0 2.99e-01 100.0% 99.3%
1vpbA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.50 41.0 3.17e-01 100.0% 35.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3484305 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.73 45.0 4.95e-01 70.4% 76.9%
3197303 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.70 48.0 3.47e-01 71.6% 70.4%
3559265 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.68 61.0 4.97e-01 97.5% 90.3%
3858981 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.68 48.0 5.08e-01 82.7% 84.3%
4020277 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 47.0 3.54e-01 71.6% 74.4%
2780879 1172.1.1.1 beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 0.66 40.0 3.60e-01 70.4% 44.1%
2494924 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.65 45.0 4.62e-01 82.7% 74.4%
3388283 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.65 56.0 4.58e-01 100.0% 51.0%
3436820 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.64 51.0 3.96e-01 95.1% 40.0%
3770163 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 44.0 4.08e-01 71.6% 67.0%
3697761 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.64 44.0 3.21e-01 71.6% 72.9%
4025866 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 43.0 2.88e-01 71.6% 26.1%
3248736 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.63 44.0 4.48e-01 82.7% 73.8%
3481274 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 55.0 4.81e-01 100.0% 64.5%
3175652 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 3.43e-01 71.6% 61.2%
3401738 11.1.1.673 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.63 44.0 3.89e-01 72.8% 73.0%
4586503 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 51.0 4.34e-01 91.4% 99.3%
3997968 5.1.5.128 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NUP159_NUP214 0.62 43.0 2.94e-01 72.8% 44.6%
4341249 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.61 42.0 3.02e-01 70.4% 87.6%
2628866 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.61 54.0 3.80e-01 100.0% 42.4%
4942841 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 42.0 3.76e-01 84.0% 51.3%
4278326 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.60 53.0 4.53e-01 100.0% 63.0%
4296175 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.60 42.0 3.07e-01 72.8% 87.3%
3481495 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.59 50.0 3.97e-01 93.8% 78.2%
3255514 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.59 49.0 3.95e-01 93.8% 68.2%
3701091 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.62e-01 81.5% 43.8%
4077803 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.59 41.0 2.95e-01 71.6% 83.9%
3173021 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 50.0 3.98e-01 93.8% 75.8%
3385898 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.59 51.0 4.17e-01 100.0% 51.0%
196538 7503.1.1.4 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.59 52.0 4.47e-01 100.0% 72.0%
3592295 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 52.0 4.21e-01 100.0% 65.0%
3967083 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 40.0 3.81e-01 72.8% 60.0%
4823574 4030.1.1.1 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.58 52.0 4.21e-01 100.0% 55.8%
3593377 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 51.0 4.57e-01 100.0% 73.0%
3969015 7503.1.1.8 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.58 50.0 4.25e-01 100.0% 57.1%
3808882 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.58 51.0 4.01e-01 100.0% 48.0%
1070223 7503.1.1.4 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.57 48.0 4.14e-01 100.0% 56.9%
4965879 881.1.1.44 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.57 50.0 3.91e-01 100.0% 78.9%
3677000 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 39.0 3.27e-01 71.6% 86.0%
5034752 7503.1.1.0 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.57 48.0 3.80e-01 100.0% 51.1%
5860 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 49.0 4.22e-01 100.0% 62.1%
3488620 395.1.1.0 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.56 38.0 4.05e-01 70.4% 95.4%
4668983 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.56 49.0 3.97e-01 100.0% 56.9%
3825482 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.55 43.0 4.29e-01 85.2% 84.7%
5042182 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.55 42.0 3.99e-01 86.4% 68.0%
3555125 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.55 44.0 3.87e-01 93.8% 56.2%
5073695 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 43.0 4.07e-01 100.0% 71.0%
3994597 6165.1.1.1 beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain › Piezo_RRas_bdg 0.55 46.0 3.26e-01 93.8% 68.1%
1758564 69.1.1.2 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.55 39.0 3.07e-01 84.0% 34.5%
5075588 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.55 44.0 4.33e-01 100.0% 82.2%
3214167 2007.2.4.4 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase › PF27561 0.55 48.0 3.07e-01 100.0% 60.5%
3596152 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.80e-01 91.4% 45.9%
3177367 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.54 47.0 3.91e-01 100.0% 53.5%
3383629 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 3.54e-01 82.7% 57.0%
5078865 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.54 42.0 3.56e-01 88.9% 50.4%
3796739 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 39.0 3.99e-01 79.0% 90.0%
3701386 7026.1.1.4 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Chorein_N 0.52 43.0 3.08e-01 97.5% 47.1%
3372583 632.3.1.15 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › PF31063 0.51 35.0 2.55e-01 71.6% 70.4%
4520610 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.51 44.0 2.86e-01 100.0% 59.3%
3387833 7503.1.1.7 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LpoB 0.50 38.0 3.08e-01 81.5% 86.3%
3388343 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.50 43.0 2.79e-01 100.0% 57.2%
3801433 2007.2.4.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase 0.50 42.0 2.76e-01 100.0% 59.8%
3641734 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.50 42.0 3.76e-01 97.5% 81.5%
5064236 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.50 43.0 3.89e-01 100.0% 71.3%