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AF074945.1__AAC33773.1__X__00007

Bact-Vir

AF074945.1__AAC33773.1__X__00007

Identity

Accession:
AF074945 ↗
Kingdom:
phage

Quality

63.0 mean pLDDT

Taxonomy

Mycoplasma_phage_MAV1

TaxID: 75590

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-225
PDB
D2 high residues 296-464
PDB
Domain cluster: rep: NC_005964.2__YP_044797.1__phiMFV1_p10__00008__D179-334
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qasA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 28.0 3.65e-01 100.0% 72.7%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 46.0 3.95e-01 79.9% 100.0%
3apzA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 46.0 3.82e-01 81.1% 100.0%
1snlA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 28.0 3.47e-01 100.0% 73.7%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 35.0 3.66e-01 74.6% 67.7%
3mzvA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 45.0 3.66e-01 88.8% 50.5%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 29.0 3.63e-01 100.0% 96.7%
3u66A00 1.25.40.590 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU 0.50 39.0 3.94e-01 80.5% 91.1%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248022 601.1.2.80 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Yip1 0.63 40.0 3.97e-01 79.3% 60.0%
3308203 601.1.2.80 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Yip1 0.62 40.0 3.76e-01 79.3% 54.0%
4226297 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.55 34.0 3.81e-01 90.5% 79.2%
5043625 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 40.0 4.23e-01 76.3% 85.3%
3290471 601.1.1.61 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF8320 0.53 39.0 4.03e-01 74.6% 94.2%
5029778 101.1.2.43 ↗ alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.53 27.0 3.45e-01 100.0% 86.7%
2512818 3758.1.1.0 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.53 45.0 3.90e-01 90.5% 100.0%
4255360 1037.1.1.1 ↗ alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.53 39.0 3.32e-01 77.5% 68.8%
4928210 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 30.0 3.79e-01 84.6% 100.0%
D3 high residues 554-682
PDB
D4 medium residues 2-62
PDB
D5 medium residues 233-295_532-552_693-766
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 29.0 3.70e-01 100.0% 77.5%
1e5bA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 29.0 3.79e-01 79.7% 81.6%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 31.0 3.94e-01 100.0% 84.8%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 37.0 3.98e-01 80.4% 71.5%
2cq4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 31.0 3.81e-01 86.7% 81.4%
2fnqA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.58 40.0 4.64e-01 100.0% 99.1%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.57 28.0 3.03e-01 100.0% 53.3%
5c86A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 30.0 3.64e-01 100.0% 80.2%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.56 31.0 3.93e-01 95.6% 94.4%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 27.0 3.20e-01 100.0% 72.8%
1xppD00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.52 25.0 2.98e-01 98.1% 66.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000149 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 35.0 3.95e-01 100.0% 70.4%
4028863 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.59 40.0 4.65e-01 100.0% 99.1%
3424803 10.10.1.4 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › ATS3 0.56 40.0 4.49e-01 100.0% 98.3%
3257462 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 30.0 3.62e-01 100.0% 83.0%
3766540 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.54 37.0 4.28e-01 99.4% 96.5%
5043748 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.51 18.0 2.48e-01 93.7% 60.0%
4941622 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.50 25.0 3.17e-01 97.5% 81.1%