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AF195902.3__ABY26963.1__LJ771_001__00001

Bact-Vir

AF195902.3__ABY26963.1__LJ771_001__00001

Identity

Accession:
AF195902 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_prophage_Lj771

TaxID: 139871

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-67
PDB
Domain cluster: rep: MK448890.1__QBX25549.1__Javan264_0001__00001__D2-58
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.69 60.0 4.81e-01 100.0% 70.2%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.68 58.0 5.31e-01 96.7% 87.3%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.66 58.0 4.49e-01 100.0% 79.6%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.66 58.0 4.30e-01 100.0% 49.7%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.65 56.0 3.79e-01 100.0% 27.7%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.65 56.0 4.09e-01 100.0% 79.9%
1ciiA02 3.30.305.10 Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 0.64 43.0 3.70e-01 70.0% 94.1%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.64 57.0 4.44e-01 100.0% 69.0%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 55.0 4.76e-01 100.0% 88.9%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 55.0 4.34e-01 100.0% 67.7%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 55.0 4.55e-01 100.0% 85.5%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.63 37.0 3.26e-01 100.0% 39.8%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 54.0 4.21e-01 100.0% 50.4%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.62 41.0 3.84e-01 86.7% 53.2%
4it1B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 53.0 4.01e-01 100.0% 74.5%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.62e-01 95.0% 74.7%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.60 53.0 4.31e-01 98.3% 67.9%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.60 52.0 3.97e-01 100.0% 59.2%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.59 49.0 3.40e-01 100.0% 25.6%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 51.0 4.07e-01 100.0% 76.5%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 4.34e-01 96.7% 75.7%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 42.0 2.65e-01 93.3% 13.7%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.56 43.0 3.55e-01 90.0% 96.7%
3c0tA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 46.0 3.20e-01 93.3% 95.0%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.36e-01 98.3% 36.4%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.54e-01 85.0% 67.6%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.54 42.0 3.60e-01 90.0% 82.1%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 47.0 3.85e-01 100.0% 74.8%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 3.55e-01 91.7% 73.0%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.75e-01 98.3% 56.8%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 45.0 2.87e-01 96.7% 89.3%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.14e-01 90.0% 55.9%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 37.0 3.14e-01 100.0% 43.0%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 42.0 3.91e-01 93.3% 74.7%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 44.0 2.66e-01 98.3% 76.9%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 44.0 4.12e-01 100.0% 81.8%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 45.0 3.02e-01 100.0% 94.2%
1gesA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 41.0 3.48e-01 95.0% 77.9%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.50e-01 91.7% 89.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3536437 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.79 68.0 5.01e-01 100.0% 38.6%
3443030 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.75 63.0 5.72e-01 100.0% 70.0%
3724891 223.2.1.28 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Afi1 0.75 66.0 4.71e-01 100.0% 34.7%
4944741 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.75 65.0 5.00e-01 100.0% 43.6%
5053785 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 63.0 4.69e-01 100.0% 43.2%
3600840 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 62.0 5.21e-01 100.0% 58.0%
3940520 223.2.1.34 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.71 60.0 4.50e-01 100.0% 37.4%
3711910 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 61.0 4.51e-01 100.0% 44.4%
3735671 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.70 61.0 5.21e-01 100.0% 76.0%
3774553 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.70 61.0 4.01e-01 100.0% 24.2%
3929223 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 59.0 4.43e-01 100.0% 38.7%
3260215 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.68 58.0 4.07e-01 100.0% 30.7%
3788077 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.68 59.0 4.35e-01 100.0% 37.6%
3193241 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.68 58.0 4.59e-01 100.0% 48.5%
3574420 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 58.0 4.35e-01 100.0% 38.7%
3957641 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.66 52.0 5.43e-01 100.0% 94.5%
4978131 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.60 50.0 3.34e-01 100.0% 21.5%
3939681 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.60 42.0 2.64e-01 73.3% 83.0%
5030040 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 44.0 2.87e-01 91.7% 17.1%
3254845 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.59e-01 85.0% 50.8%
3297150 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.82e-01 83.3% 52.0%
5042035 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.59 49.0 3.46e-01 100.0% 33.0%
3697493 5.1.5.70 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › TFIIIC_delta 0.59 48.0 2.90e-01 90.0% 29.9%
3825482 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.57 46.0 4.14e-01 90.0% 82.4%
4180012 868.1.1.5 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.57 45.0 3.05e-01 90.0% 52.5%
3481274 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 51.0 4.03e-01 100.0% 62.9%
4990321 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.56 44.0 3.10e-01 100.0% 24.3%
3017364 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.55 38.0 2.53e-01 71.7% 28.2%
3174953 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.54 43.0 3.03e-01 95.0% 26.2%
3465489 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 38.0 3.04e-01 73.3% 79.2%
3557455 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 38.0 2.52e-01 78.3% 27.8%
3876541 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.53 38.0 2.52e-01 78.3% 28.0%
1442666 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.52 42.0 3.89e-01 93.3% 72.8%
3574867 11.1.1.673 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.51 42.0 3.56e-01 90.0% 78.0%
2867998 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 41.0 3.55e-01 93.3% 87.6%
4892175 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.50 41.0 3.33e-01 100.0% 48.9%
3677000 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 43.0 3.20e-01 95.0% 50.0%
D2 high residues 78-162
PDB
Domain cluster: rep: IMGVR_UViG_3300021488_000008-3300021488-Ga0190305_100017515__D59-140
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.90 82.0 7.69e-01 100.0% 82.0%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.83 77.0 7.13e-01 100.0% 81.7%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.77 68.0 6.79e-01 100.0% 94.2%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.75 67.0 6.52e-01 97.6% 88.3%
3d1uA03 1.20.1270.240 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 42.0 4.02e-01 95.3% 57.4%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.61 34.0 4.28e-01 100.0% 93.9%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.60 41.0 4.55e-01 94.1% 95.4%
4fqnC00 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.59 42.0 4.26e-01 97.6% 74.1%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 43.0 4.67e-01 100.0% 92.8%
3gyuA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 50.0 3.69e-01 100.0% 55.4%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.57 33.0 4.03e-01 89.4% 92.3%
3lzhA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 51.0 3.92e-01 100.0% 67.5%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.56 35.0 3.84e-01 100.0% 79.1%
2kbwA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.56 45.0 3.83e-01 91.8% 60.1%
3au4A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.55 38.0 2.92e-01 71.8% 50.5%
3hgkE00 1.20.1280.110 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 32.0 3.32e-01 91.8% 63.6%
2p3yA02 1.10.3360.10 Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain 0.53 37.0 3.51e-01 74.1% 96.3%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 38.0 3.22e-01 77.6% 94.0%
3d2eA06 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 38.0 3.48e-01 95.3% 57.5%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 45.0 4.29e-01 100.0% 93.2%
2wssW01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.52 42.0 4.15e-01 94.1% 84.2%
1n62C02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 43.0 4.09e-01 95.3% 100.0%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.52 43.0 3.95e-01 94.1% 70.6%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 42.0 4.26e-01 95.3% 100.0%
3vibA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 37.0 2.98e-01 78.8% 51.8%
6cw0A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 44.0 4.17e-01 98.8% 94.2%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.51 36.0 3.53e-01 74.1% 72.5%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.51 37.0 3.75e-01 100.0% 75.9%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587101 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.94 89.0 8.14e-01 100.0% 80.0%
4004484 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.94 89.0 7.90e-01 100.0% 83.5%
3589750 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.93 84.0 7.72e-01 100.0% 76.2%
4663744 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.93 83.0 7.49e-01 100.0% 72.7%
4009383 186.1.1.3 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_5 0.93 88.0 7.77e-01 100.0% 83.5%
4334667 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.92 85.0 7.97e-01 100.0% 82.0%
3964236 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.92 84.0 7.34e-01 100.0% 68.3%
3978656 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.91 86.0 7.64e-01 100.0% 83.5%
4004726 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.88 78.0 6.97e-01 100.0% 70.4%
4629318 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.87 82.0 7.56e-01 100.0% 81.9%
4965844 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.85 79.0 7.18e-01 100.0% 77.3%
3986874 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.85 68.0 6.84e-01 83.5% 87.1%
4040148 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 75.0 7.12e-01 100.0% 87.0%
4377812 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 75.0 7.12e-01 100.0% 87.0%
4969225 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.81 73.0 6.68e-01 98.8% 77.3%
5076856 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 74.0 6.85e-01 100.0% 87.6%
4173849 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 74.0 6.68e-01 98.8% 78.2%
4160987 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 73.0 6.65e-01 100.0% 79.1%
135559 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.77 68.0 6.34e-01 100.0% 78.6%
3588615 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 38.0 3.79e-01 97.6% 57.8%
4042803 101.1.17.32 ↗ alpha arrays › HTH › HTH › FF domain › LRR_LRWD1 0.62 46.0 4.62e-01 78.8% 89.4%
4192670 5093.1.1.5 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Gypsy 0.61 35.0 2.35e-01 100.0% 14.6%
2966548 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.57 48.0 3.91e-01 100.0% 47.5%
4972768 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 43.0 3.03e-01 85.9% 48.8%
3705382 601.2.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.54 34.0 3.42e-01 87.1% 61.2%
4993063 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.54 45.0 4.08e-01 94.1% 79.2%
3724595 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.54 36.0 4.11e-01 88.2% 100.0%
3620069 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.52 46.0 4.36e-01 100.0% 82.9%
3801576 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.52 46.0 4.39e-01 100.0% 87.0%
3282674 371.1.1.3 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_3 0.52 44.0 4.23e-01 96.5% 85.0%
5002539 101.1.2.906 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF1016_N 0.52 37.0 3.55e-01 77.6% 63.8%
3710592 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.51 44.0 4.25e-01 94.1% 85.3%
3192264 7076.1.1.0 ↗ 0.50 43.0 4.05e-01 91.8% 80.0%
D3 medium residues 191-217_319-395
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF16795.11 best Phage_integr_3 29.0 1.30e-06 82.7% 45.3%
PF00589.28 Phage_integrase 48.5 1.20e-12 71.2% 34.3%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.92 87.0 6.53e-01 99.0% 97.3%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.78 66.0 5.09e-01 89.4% 95.7%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.74 63.0 5.07e-01 92.3% 98.5%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 34.0 4.55e-01 91.3% 93.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 34.0 3.82e-01 90.4% 71.2%
2gytA01 1.10.287.2070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 32.0 3.73e-01 89.4% 80.3%
4ex6A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 32.0 3.76e-01 95.2% 85.1%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 30.0 3.48e-01 95.2% 84.1%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 36.0 3.92e-01 71.2% 97.6%
2zj2A04 1.10.3380.20 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.52 45.0 3.81e-01 94.2% 79.6%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.51 29.0 3.03e-01 94.2% 60.6%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 31.0 3.48e-01 95.2% 79.7%
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.51 42.0 4.25e-01 100.0% 87.7%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.51 42.0 3.30e-01 89.4% 55.0%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.50 30.0 3.37e-01 92.3% 76.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031675 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 62.0 7.13e-01 74.0% 98.7%
4004483 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 73.0 5.81e-01 92.3% 92.6%
5076857 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 67.0 5.52e-01 86.5% 92.0%
4475168 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 74.0 5.86e-01 97.1% 94.9%
4994277 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 69.0 5.68e-01 91.3% 95.0%
5000880 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 70.0 5.75e-01 98.1% 96.1%
4981966 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 64.0 5.11e-01 96.2% 94.5%
4281782 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.65 45.0 5.29e-01 90.4% 98.7%
5064982 3290.1.1.1 ↗ alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto 0.56 36.0 3.98e-01 95.2% 83.7%
3886097 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 36.0 4.11e-01 83.7% 92.0%
3989117 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.55 37.0 3.84e-01 83.7% 73.0%
3990438 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.51 36.0 3.56e-01 74.0% 100.0%
D4 medium residues 218-318
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.71 55.0 4.59e-01 100.0% 48.0%
1a41A01 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.69 52.0 4.79e-01 100.0% 62.2%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.69 59.0 4.65e-01 100.0% 46.9%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.67 54.0 4.06e-01 100.0% 36.5%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.64 60.0 4.60e-01 100.0% 57.8%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 38.0 4.26e-01 81.2% 88.3%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 32.0 3.76e-01 87.1% 93.1%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 31.0 3.69e-01 72.3% 83.6%
3fmcA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 33.0 3.75e-01 99.0% 83.8%
2w2jA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.51 39.0 2.94e-01 83.2% 73.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 32.0 3.10e-01 97.0% 55.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3957659 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 76.0 6.74e-01 100.0% 66.7%
4930303 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 60.0 5.73e-01 100.0% 63.5%
4637388 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 60.0 4.91e-01 100.0% 43.5%
3587110 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 77.0 6.57e-01 100.0% 66.0%
5016981 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 59.0 5.54e-01 100.0% 63.3%
3979114 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 62.0 5.61e-01 100.0% 61.5%
3278982 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 75.0 6.85e-01 100.0% 91.5%
4979786 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 59.0 5.53e-01 100.0% 64.2%
3954716 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 73.0 6.44e-01 100.0% 70.0%
4122043 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 58.0 5.43e-01 100.0% 63.3%
3589779 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 75.0 6.42e-01 100.0% 70.7%
4659012 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 74.0 6.46e-01 100.0% 71.0%
3587374 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 73.0 6.11e-01 100.0% 72.1%
5058518 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 62.0 4.91e-01 100.0% 43.1%
4004713 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 61.0 5.47e-01 100.0% 60.7%
4137254 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 73.0 6.23e-01 100.0% 66.5%
4392937 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 56.0 4.76e-01 100.0% 48.4%
5030401 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 62.0 5.54e-01 100.0% 62.2%
4007467 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 66.0 5.04e-01 100.0% 41.8%
4966027 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 57.0 4.62e-01 100.0% 42.4%
4940211 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 61.0 5.03e-01 100.0% 49.4%
5000880 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 56.0 4.56e-01 100.0% 42.8%
4134015 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.07e-01 100.0% 74.8%
3945675 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 65.0 5.77e-01 100.0% 65.7%
5072041 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 58.0 5.30e-01 100.0% 62.3%
5057283 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 61.0 5.45e-01 100.0% 63.0%
5054951 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 59.0 5.40e-01 100.0% 63.8%
4975028 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.76 59.0 5.58e-01 100.0% 69.2%
4929009 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 60.0 5.45e-01 100.0% 64.6%
5003452 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 61.0 5.63e-01 100.0% 67.7%
4200953 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 64.0 5.47e-01 100.0% 60.0%
4932090 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 59.0 5.48e-01 100.0% 68.8%
3964227 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 61.0 5.56e-01 100.0% 68.5%
4962166 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 57.0 4.60e-01 100.0% 44.9%
5059725 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 56.0 4.56e-01 100.0% 45.6%
4933965 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 58.0 5.36e-01 100.0% 68.8%
3839627 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 56.0 5.04e-01 100.0% 61.5%
3942448 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 64.0 5.50e-01 100.0% 64.0%
4961917 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.70 58.0 4.63e-01 100.0% 46.3%
4940128 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.70 59.0 5.51e-01 100.0% 72.8%
3838435 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 44.0 4.60e-01 87.1% 69.5%
4934137 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.65 59.0 5.05e-01 100.0% 63.2%
4938259 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.64 59.0 5.18e-01 100.0% 75.2%
3942380 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.60 56.0 4.64e-01 100.0% 62.5%
3926774 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.60 54.0 4.82e-01 100.0% 71.4%
3271483 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 53.0 4.31e-01 100.0% 52.6%
3251731 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.59 53.0 4.60e-01 100.0% 64.5%
3839222 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.58 54.0 4.80e-01 100.0% 77.1%
4970135 1.1.7.83 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C 0.52 31.0 3.34e-01 88.1% 69.4%