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AF195902.3__ABY26964.1__LJ771_002__00002

Bact-Vir

AF195902.3__ABY26964.1__LJ771_002__00002

Identity

Accession:
AF195902 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 137-206
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07467.19 BLIP 35.5 1.50e-08 100.0% 55.3%
PF12978.14 best DUF3862 63.2 3.80e-17 100.0% 43.4%
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.95 90.0 8.63e-01 100.0% 91.0%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.82 75.0 6.86e-01 100.0% 87.9%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.79 73.0 6.85e-01 100.0% 88.1%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.78 71.0 5.41e-01 100.0% 48.1%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.75 67.0 6.19e-01 97.1% 78.2%
2oiwA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.72 49.0 3.95e-01 71.4% 99.2%
2cyeC00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.70 50.0 4.04e-01 75.7% 78.8%
5eo4A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 47.0 3.70e-01 70.0% 77.7%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.69 61.0 4.81e-01 100.0% 84.9%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.68 53.0 3.40e-01 82.9% 24.1%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 60.0 5.38e-01 97.1% 86.3%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 50.0 3.14e-01 80.0% 22.8%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.66 55.0 4.22e-01 94.3% 67.1%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 51.0 3.19e-01 82.9% 16.0%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 50.0 3.24e-01 82.9% 21.3%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 49.0 3.27e-01 81.4% 21.7%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.65 44.0 3.65e-01 70.0% 74.6%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 58.0 4.98e-01 98.6% 76.9%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.65 54.0 3.98e-01 88.6% 97.6%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 44.0 3.80e-01 72.9% 45.3%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.64 55.0 4.80e-01 95.7% 80.2%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 48.0 4.85e-01 81.4% 78.9%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 4.16e-01 84.3% 91.7%
2g18I00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.63 50.0 3.46e-01 87.1% 46.6%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 4.03e-01 84.3% 82.0%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 48.0 3.08e-01 82.9% 20.4%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 43.0 3.35e-01 71.4% 33.8%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 44.0 3.57e-01 74.3% 63.1%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.62 46.0 3.79e-01 81.4% 91.6%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 54.0 4.98e-01 100.0% 89.0%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 47.0 2.92e-01 82.9% 15.2%
3glaA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 44.0 3.99e-01 80.0% 72.2%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 52.0 4.29e-01 100.0% 55.5%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.59 51.0 3.76e-01 98.6% 67.5%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 46.0 3.37e-01 85.7% 95.9%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 50.0 3.18e-01 97.1% 19.5%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.58 46.0 4.05e-01 84.3% 86.3%
1vqzA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 42.0 3.94e-01 78.6% 61.4%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 4.16e-01 91.4% 85.6%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 45.0 4.05e-01 85.7% 81.8%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 48.0 3.17e-01 95.7% 26.3%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 47.0 4.09e-01 91.4% 87.3%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.57 47.0 3.70e-01 92.9% 84.6%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 41.0 2.71e-01 81.4% 22.8%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.55 44.0 3.47e-01 85.7% 79.6%
2rb7A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 48.0 3.33e-01 100.0% 97.2%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 47.0 3.45e-01 98.6% 69.5%
2pfcA00 3.10.129.30 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain 0.55 43.0 3.33e-01 85.7% 65.0%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.55 42.0 3.81e-01 85.7% 97.0%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 3.69e-01 81.4% 83.7%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.54 44.0 3.71e-01 94.3% 85.3%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 42.0 2.82e-01 87.1% 88.4%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.79e-01 94.3% 68.8%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.53 39.0 3.50e-01 80.0% 94.1%
1kvzA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.52 39.0 3.55e-01 85.7% 98.1%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.52 42.0 4.18e-01 90.0% 98.7%
2giyB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.41e-01 100.0% 61.8%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 43.0 2.82e-01 98.6% 96.4%
2ykfA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 42.0 3.43e-01 95.7% 71.2%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 42.0 2.97e-01 95.7% 97.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1758198 809.1.1.3 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 0.95 90.0 8.68e-01 100.0% 92.2%
5079534 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.84 66.0 5.83e-01 90.0% 60.0%
1760289 809.1.1.3 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 0.79 73.0 6.85e-01 100.0% 88.1%
3965976 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.76 68.0 6.08e-01 97.1% 72.3%
3969465 6043.1.1.0 a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.73 64.0 6.14e-01 95.7% 93.8%
4067255 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.73 67.0 6.24e-01 100.0% 82.4%
4216850 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.72 67.0 6.26e-01 100.0% 82.4%
5045102 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 62.0 5.59e-01 94.3% 81.1%
4661228 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.72 67.0 6.08e-01 100.0% 77.8%
3436416 2484.5.1.3 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.72 40.0 3.46e-01 88.6% 37.1%
3937491 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 49.0 3.92e-01 71.4% 71.9%
5022396 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.71 48.0 4.58e-01 70.0% 62.5%
365513 331.15.1.1 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.68 61.0 5.39e-01 97.1% 82.8%
3488499 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 51.0 4.03e-01 81.4% 46.2%
3266326 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.67 46.0 3.80e-01 71.4% 65.6%
3290541 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.67 49.0 5.09e-01 78.6% 87.7%
4202460 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.67 55.0 5.10e-01 91.4% 91.1%
3414555 5.1.4.30 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LLGL 0.66 51.0 2.85e-01 82.9% 6.8%
5030147 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 55.0 4.38e-01 92.9% 69.0%
3315197 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.65 45.0 3.58e-01 72.9% 71.7%
4059480 881.1.1.37 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.65 55.0 4.15e-01 94.3% 50.9%
3792083 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 50.0 3.16e-01 81.4% 16.8%
4382051 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.65 57.0 4.90e-01 100.0% 83.5%
164598 331.15.1.1 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.65 58.0 4.98e-01 98.6% 76.9%
3598995 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.65 48.0 3.09e-01 80.0% 17.3%
3930954 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 52.0 4.88e-01 90.0% 92.9%
138908 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.64 49.0 4.16e-01 84.3% 91.7%
4331578 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.64 56.0 4.94e-01 100.0% 86.7%
3595137 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 49.0 2.98e-01 82.9% 15.3%
3626375 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 54.0 5.44e-01 94.3% 98.6%
4444078 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.63 57.0 4.81e-01 100.0% 78.3%
5050464 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 49.0 3.57e-01 84.3% 30.3%
3015419 867.1.1.2 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.63 50.0 3.45e-01 87.1% 46.9%
3213871 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 48.0 3.10e-01 82.9% 20.6%
5045707 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 49.0 4.78e-01 84.3% 89.3%
5038819 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.63 44.0 3.05e-01 74.3% 81.9%
4864284 5.1.4.267 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 0.62 48.0 3.66e-01 82.9% 42.3%
3740970 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.62 48.0 3.06e-01 82.9% 19.4%
3295575 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.62 39.0 3.46e-01 70.0% 44.0%
5032832 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.62 48.0 2.95e-01 84.3% 17.9%
3682129 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.61 46.0 2.94e-01 82.9% 20.3%
3572782 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.60 47.0 2.98e-01 84.3% 19.7%
5082784 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 54.0 4.98e-01 100.0% 97.8%
3799231 11.1.1.67 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.60 51.0 3.92e-01 92.9% 76.8%
4142588 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.60 52.0 3.84e-01 98.6% 40.5%
4942779 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.59 48.0 4.16e-01 92.9% 84.3%
4991691 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 46.0 3.28e-01 87.1% 38.9%
3470047 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.58 51.0 4.75e-01 95.7% 97.6%
4966333 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 42.0 4.36e-01 77.1% 92.3%
3819875 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 43.0 2.78e-01 81.4% 23.9%
3492822 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 46.0 3.01e-01 95.7% 53.8%
5067842 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.54 43.0 3.40e-01 85.7% 82.9%
5017105 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 40.0 3.06e-01 78.6% 88.1%
3638655 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 40.0 2.56e-01 80.0% 44.4%
4941167 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 45.0 3.78e-01 94.3% 63.3%
4977196 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 40.0 2.78e-01 85.7% 80.8%
4541933 223.1.1.43 a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.51 40.0 3.10e-01 87.1% 65.6%
3727515 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 43.0 3.34e-01 100.0% 81.8%
4999247 873.1.1.11 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27343 0.51 40.0 3.33e-01 95.7% 88.7%
4986643 2484.1.1.148 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_5 0.50 42.0 2.75e-01 98.6% 19.7%
D2 medium residues 53-118
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12978.14 best DUF3862 56.4 4.90e-15 100.0% 39.6%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.92 85.0 7.74e-01 100.0% 77.4%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.78 67.0 6.06e-01 100.0% 70.1%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.77 68.0 6.39e-01 100.0% 79.5%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.73 52.0 4.08e-01 75.8% 39.1%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 49.0 4.62e-01 71.2% 63.0%
3p2nB02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.70 48.0 3.04e-01 71.2% 18.1%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 48.0 4.68e-01 71.2% 70.4%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.68 48.0 3.69e-01 75.8% 73.4%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.67 57.0 3.88e-01 95.5% 94.6%
4depC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 50.0 4.31e-01 81.8% 88.2%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 55.0 3.87e-01 92.4% 37.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.58e-01 71.2% 92.1%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 58.0 5.13e-01 100.0% 77.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.64 53.0 4.09e-01 89.4% 85.7%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 49.0 4.41e-01 81.8% 84.1%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.63 56.0 4.33e-01 100.0% 77.4%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.63 43.0 3.73e-01 71.2% 71.6%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 53.0 3.96e-01 92.4% 87.9%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.62 49.0 3.94e-01 87.9% 71.3%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 47.0 4.02e-01 81.8% 87.7%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 55.0 4.69e-01 100.0% 68.5%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 42.0 4.05e-01 72.7% 73.1%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 41.0 2.63e-01 71.2% 12.8%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 46.0 3.82e-01 84.8% 100.0%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.59 44.0 3.63e-01 84.8% 88.8%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 47.0 3.90e-01 92.4% 76.0%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 49.0 3.98e-01 95.5% 71.1%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.44e-01 80.3% 81.5%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 3.44e-01 97.0% 58.6%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 49.0 3.84e-01 97.0% 64.4%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.56 45.0 3.56e-01 89.4% 65.7%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 45.0 3.90e-01 95.5% 89.1%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 3.69e-01 95.5% 83.7%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 4.05e-01 90.9% 87.6%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 49.0 4.19e-01 100.0% 82.4%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 36.0 3.50e-01 98.5% 61.3%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 47.0 3.86e-01 100.0% 60.3%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.53 45.0 3.23e-01 100.0% 65.5%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 45.0 3.97e-01 95.5% 80.8%
3p3yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.05e-01 95.5% 97.8%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 44.0 2.86e-01 97.0% 88.5%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.50e-01 97.0% 86.7%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.41e-01 98.5% 78.1%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 45.0 3.93e-01 95.5% 77.3%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.34e-01 95.5% 60.4%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 44.0 3.89e-01 97.0% 84.7%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.51 38.0 3.10e-01 98.5% 40.6%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 44.0 3.86e-01 100.0% 78.6%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 41.0 2.86e-01 100.0% 50.7%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 35.0 2.77e-01 100.0% 35.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.50 40.0 3.58e-01 87.9% 91.5%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1760289 809.1.1.3 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 0.92 85.0 7.74e-01 100.0% 77.4%
3965976 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.80 68.0 5.99e-01 100.0% 63.8%
5079534 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.80 61.0 5.39e-01 100.0% 56.8%
1758198 809.1.1.3 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 0.77 68.0 6.42e-01 100.0% 80.5%
4941649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 55.0 4.83e-01 77.3% 70.5%
4957141 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 50.0 4.83e-01 71.2% 89.3%
3540354 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 49.0 4.93e-01 71.2% 86.8%
3267290 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.71 49.0 3.06e-01 71.2% 14.3%
3670595 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 49.0 4.39e-01 72.7% 58.9%
5073192 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.71 51.0 5.18e-01 75.8% 98.5%
4033432 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.71 48.0 5.05e-01 71.2% 83.3%
3802643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 49.0 4.37e-01 72.7% 58.9%
3809302 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 48.0 4.47e-01 72.7% 65.9%
5019052 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.69 57.0 4.79e-01 89.4% 55.6%
1170462 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.69 47.0 4.93e-01 71.2% 80.3%
3420092 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 49.0 4.60e-01 75.8% 72.5%
2834342 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.68 47.0 4.71e-01 72.7% 75.0%
3435911 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 48.0 4.08e-01 75.8% 51.8%
4243492 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.67 46.0 4.77e-01 71.2% 83.3%
3707085 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.66 46.0 3.17e-01 72.7% 29.1%
3686517 220.1.1.112 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.66 52.0 3.91e-01 86.4% 61.8%
4966333 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 45.0 4.57e-01 71.2% 81.5%
5024203 330.10.1.0 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.65 50.0 4.50e-01 81.8% 75.6%
3304346 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 44.0 4.37e-01 72.7% 82.9%
3584249 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.64 54.0 4.54e-01 92.4% 63.6%
365513 331.15.1.1 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.64 57.0 4.95e-01 100.0% 76.8%
3314422 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 43.0 4.25e-01 72.7% 82.9%
164598 331.15.1.1 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.62 55.0 4.69e-01 100.0% 68.5%
3404871 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.60 50.0 4.15e-01 89.4% 79.1%
5032889 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.60 50.0 3.33e-01 95.5% 39.7%
3496857 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 4.26e-01 93.9% 82.9%
165654 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 40.0 3.91e-01 90.9% 63.5%
4938033 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 49.0 4.27e-01 97.0% 92.7%
3553623 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.59 47.0 3.85e-01 87.9% 75.2%
3851316 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.58 47.0 3.43e-01 86.4% 83.5%
3510850 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.58 47.0 4.21e-01 86.4% 86.7%
4083857 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 50.0 3.91e-01 95.5% 76.4%
4937869 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.58 46.0 4.19e-01 84.8% 89.4%
5054994 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 4.47e-01 95.5% 100.0%
4932472 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 45.0 4.04e-01 86.4% 80.0%
3881671 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.58 46.0 3.82e-01 87.9% 79.2%
3955541 2003.1.2.155 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_7 0.57 41.0 3.39e-01 80.3% 77.8%
3970193 319.3.1.0 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.57 41.0 3.62e-01 92.4% 52.6%
3767960 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.56 46.0 3.73e-01 89.4% 79.2%
4031750 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.55 45.0 4.04e-01 93.9% 100.0%
5005288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 50.0 3.73e-01 100.0% 76.1%
3276150 2.1.1.52 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.54 49.0 3.74e-01 100.0% 70.0%
4541933 223.1.1.43 a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.54 47.0 3.55e-01 97.0% 70.0%
4934762 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.54 44.0 3.79e-01 95.5% 89.6%
5051613 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 3.71e-01 92.4% 65.3%
17 1.1.1.5 beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.53 47.0 3.82e-01 100.0% 57.9%
3838288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 48.0 3.97e-01 100.0% 74.8%
4139943 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 47.0 3.58e-01 100.0% 78.7%
5012544 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 47.0 4.03e-01 100.0% 86.7%
4680387 1.1.10.0 beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) 0.51 35.0 3.34e-01 72.7% 92.5%
4271190 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.51 45.0 3.54e-01 100.0% 59.3%
4130753 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.51 42.0 2.76e-01 100.0% 91.1%
3560835 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.51 43.0 2.75e-01 95.5% 45.6%
3687908 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.50 42.0 3.67e-01 100.0% 80.0%
4464657 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.50 44.0 4.09e-01 95.5% 88.7%