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AF226851.1__ACG69468.1__X__00002
Bact-VirAF226851.1__ACG69468.1__X__00002
Identity
- Accession:
- AF226851 ↗
- Kingdom:
- phage
Quality
67.5
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Vidaverviricetes›
Mindivirales›
Cystoviridae›
Alphacystovirus›
Pseudomonas_phage_phi8
TaxID: 120086
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 27-76
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d1lA00 | 3.30.240.10 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor | 0.78 | 54.0 | 5.03e-01 | 78.0% | 59.0% |
| 1ku3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 69.0 | 6.44e-01 | 100.0% | 93.4% |
| 1le8A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 58.0 | 5.67e-01 | 80.0% | 77.4% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 67.0 | 6.23e-01 | 100.0% | 82.8% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 66.0 | 6.16e-01 | 100.0% | 90.5% |
| 2btqB03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 64.0 | 6.38e-01 | 100.0% | 96.2% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 66.0 | 5.25e-01 | 100.0% | 67.3% |
| 1xwyA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.74 | 63.0 | 3.94e-01 | 94.0% | 42.3% |
| 1x2nA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 61.0 | 5.74e-01 | 90.0% | 81.7% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 57.0 | 5.70e-01 | 86.0% | 82.0% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 62.0 | 5.49e-01 | 94.0% | 68.1% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 60.0 | 5.68e-01 | 96.0% | 86.7% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 57.0 | 5.05e-01 | 92.0% | 64.0% |
| 4u7bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 48.0 | 5.34e-01 | 78.0% | 94.9% |
| 1wi9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 52.0 | 5.01e-01 | 86.0% | 70.7% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 50.0 | 5.16e-01 | 78.0% | 83.0% |
| 2jn6A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 56.0 | 4.68e-01 | 90.0% | 58.8% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 59.0 | 4.82e-01 | 92.0% | 76.2% |
| 1obhA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.68 | 55.0 | 3.31e-01 | 88.0% | 23.2% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 54.0 | 4.82e-01 | 88.0% | 63.4% |
| 1biaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 50.0 | 4.63e-01 | 86.0% | 62.5% |
| 4oazA00 | 1.10.10.1930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.67 | 52.0 | 4.54e-01 | 84.0% | 80.0% |
| 2l1pA00 | 1.10.260.70 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › SATB, CULT domain | 0.67 | 51.0 | 4.40e-01 | 86.0% | 51.8% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 56.0 | 5.48e-01 | 92.0% | 89.1% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 57.0 | 4.71e-01 | 100.0% | 61.7% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 48.0 | 4.96e-01 | 78.0% | 85.1% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 50.0 | 4.65e-01 | 86.0% | 65.1% |
| 2h09A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 4.52e-01 | 88.0% | 64.8% |
| 5f7qC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 47.0 | 4.23e-01 | 86.0% | 58.6% |
| 4gczA03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.63 | 55.0 | 5.05e-01 | 100.0% | 76.9% |
| 2ofyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 49.0 | 4.43e-01 | 88.0% | 64.3% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.62 | 54.0 | 4.48e-01 | 100.0% | 60.0% |
| 2ebyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 54.0 | 4.65e-01 | 98.0% | 97.5% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.60 | 52.0 | 3.63e-01 | 100.0% | 32.2% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.57 | 40.0 | 4.22e-01 | 78.0% | 97.6% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979523 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.84 | 63.0 | 5.18e-01 | 82.0% | 45.6% |
| 3693312 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 71.0 | 6.64e-01 | 96.0% | 81.7% |
| 3589532 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 67.0 | 5.36e-01 | 100.0% | 54.1% |
| 4202058 | 2005.1.1.40 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g | 0.76 | 63.0 | 3.87e-01 | 88.0% | 27.8% |
| 5030108 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.74 | 59.0 | 5.69e-01 | 86.0% | 76.4% |
| 1307505 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.74 | 64.0 | 4.47e-01 | 100.0% | 30.4% |
| 4941943 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.74 | 59.0 | 5.49e-01 | 86.0% | 70.0% |
| 4947580 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.74 | 64.0 | 4.39e-01 | 100.0% | 28.3% |
| 3511100 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.74 | 56.0 | 5.48e-01 | 82.0% | 74.5% |
| 4947436 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 66.0 | 6.46e-01 | 100.0% | 96.4% |
| 3589930 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.73 | 54.0 | 4.68e-01 | 82.0% | 52.0% |
| 3243507 | 101.1.1.289 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB | 0.73 | 64.0 | 5.80e-01 | 96.0% | 80.0% |
| 4963553 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.72 | 59.0 | 3.54e-01 | 88.0% | 24.1% |
| 5028930 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.72 | 55.0 | 5.16e-01 | 86.0% | 68.3% |
| 3976541 | 101.1.4.6 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII | 0.71 | 56.0 | 4.97e-01 | 88.0% | 60.0% |
| 4945888 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.70 | 59.0 | 5.19e-01 | 100.0% | 63.7% |
| 5076741 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.69 | 57.0 | 5.74e-01 | 92.0% | 88.0% |
| 4964802 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 55.0 | 5.21e-01 | 90.0% | 88.3% |
| 5028998 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.68 | 57.0 | 5.54e-01 | 92.0% | 87.3% |
| 2572 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.67 | 57.0 | 5.23e-01 | 92.0% | 76.2% |
| 4012268 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.67 | 50.0 | 3.32e-01 | 90.0% | 19.5% |
| 3180778 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.67 | 50.0 | 4.62e-01 | 80.0% | 63.1% |
| 3963650 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 57.0 | 5.75e-01 | 94.0% | 98.0% |
| 2786 | 101.1.4.6 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII | 0.66 | 53.0 | 4.63e-01 | 90.0% | 60.3% |
| 5055914 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 56.0 | 5.40e-01 | 92.0% | 89.1% |
| 3829000 | 3161.1.1.1 ↗ | alpha duplicates or obligate multimers › LOB domain › LOB domain › LOB domain › LOB | 0.64 | 47.0 | 4.09e-01 | 82.0% | 52.0% |
| 3590854 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.64 | 54.0 | 4.47e-01 | 100.0% | 53.7% |
| 5031306 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.63 | 52.0 | 5.06e-01 | 92.0% | 83.6% |
| 3391602 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 45.0 | 4.09e-01 | 78.0% | 85.7% |
| 3736326 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 51.0 | 4.69e-01 | 90.0% | 70.8% |
| 5079731 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 50.0 | 4.53e-01 | 92.0% | 65.7% |
| 3527457 | 101.1.1.52 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD | 0.61 | 46.0 | 4.57e-01 | 90.0% | 78.2% |