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AF232233.1__AAQ13922.1__B3ORF4__00004

Bact-Vir

AF232233.1__AAQ13922.1__B3ORF4__00004

Identity

Accession:
AF232233 ↗
Kingdom:
phage

Quality

70.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Beetrevirus› Pseudomonas_phage_B3

TaxID: 151599

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-98
PDB
Domain cluster: rep: NC_061434.1__YP_010299151.1__MPI97_gp13__00013__D14-64
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.63 44.0 3.27e-01 74.6% 31.0%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 3.31e-01 81.0% 89.8%
2fh5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 46.0 3.38e-01 87.3% 52.1%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.59 44.0 3.62e-01 79.4% 79.7%
2fh5A01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 41.0 3.30e-01 76.2% 75.4%
7x4lC02 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 47.0 3.75e-01 95.2% 68.0%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 2.99e-01 92.1% 38.3%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 3.32e-01 90.5% 95.8%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.04e-01 81.0% 88.8%
1fs7A01 1.10.1130.10 Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A 0.55 44.0 2.89e-01 92.1% 86.7%
3vpyA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 40.0 3.19e-01 82.5% 59.3%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 40.0 2.85e-01 77.8% 64.6%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 36.0 3.55e-01 71.4% 63.2%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.03e-01 93.7% 95.6%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 37.0 3.20e-01 74.6% 79.4%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 47.0 3.48e-01 100.0% 62.2%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 41.0 2.78e-01 90.5% 52.6%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 41.0 3.09e-01 88.9% 54.5%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4382937 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.85 40.0 2.48e-01 82.5% 9.8%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.75 46.0 3.09e-01 96.8% 17.8%
4983447 3457.1.1.3 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.73 52.0 3.43e-01 76.2% 28.7%
3700547 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.67 45.0 2.59e-01 71.4% 23.7%
4965204 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.66 47.0 3.86e-01 76.2% 79.2%
3901459 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 46.0 2.57e-01 76.2% 27.3%
3601299 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 46.0 3.75e-01 79.4% 42.4%
5078624 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.62 46.0 3.80e-01 77.8% 61.0%
3739386 109.4.1.3152 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, TPR_16, TPR_19, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N 0.58 50.0 2.82e-01 92.1% 14.3%
3501318 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.58 42.0 2.61e-01 77.8% 67.9%
3561667 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 51.0 3.08e-01 98.4% 62.0%
3996689 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.58 39.0 3.66e-01 71.4% 61.2%
3800293 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 39.0 3.46e-01 71.4% 49.5%
3717300 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 50.0 3.00e-01 100.0% 87.1%
3356202 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 41.0 2.68e-01 79.4% 23.7%
3971108 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 46.0 4.08e-01 90.5% 62.2%
4944096 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.56 34.0 2.71e-01 71.4% 30.6%
4882106 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.56 41.0 3.56e-01 79.4% 66.7%
3517620 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 49.0 3.15e-01 100.0% 31.9%
3351247 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 47.0 3.80e-01 100.0% 47.7%
3519143 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 50.0 3.14e-01 100.0% 85.9%
3479321 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.55 48.0 2.98e-01 100.0% 39.5%
5010647 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.55 46.0 3.13e-01 93.7% 67.6%
4160831 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.54 46.0 2.64e-01 96.8% 9.6%
4222853 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.54 47.0 3.86e-01 100.0% 53.0%
None — 0.53 41.0 2.67e-01 82.5% 45.2%
3316686 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.53 44.0 2.97e-01 100.0% 24.2%
3367574 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.53 42.0 3.20e-01 98.4% 70.8%
5005033 304.39.1.0 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.53 37.0 3.44e-01 74.6% 98.8%
3303720 3336.1.1.1 ↗ alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.53 47.0 2.88e-01 100.0% 39.5%
1888906 2002.1.1.39 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 0.52 42.0 2.67e-01 95.2% 95.4%
3256573 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 44.0 3.35e-01 98.4% 58.2%
3213645 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.52 38.0 2.64e-01 82.5% 42.4%
4223968 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.50 35.0 3.32e-01 76.2% 81.2%
D2 high residues 107-148
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 5.19e-01 97.6% 96.5%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 4.74e-01 97.6% 85.3%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 4.93e-01 97.6% 100.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.65e-01 100.0% 66.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 4.84e-01 100.0% 73.3%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 4.65e-01 97.6% 79.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 4.53e-01 97.6% 82.4%
2qy6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 43.0 2.72e-01 71.4% 43.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.62e-01 100.0% 65.2%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.63 50.0 4.44e-01 100.0% 95.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.50e-01 100.0% 76.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.53e-01 100.0% 68.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.35e-01 100.0% 77.8%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.49e-01 100.0% 70.0%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.60 44.0 3.42e-01 83.3% 39.3%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.47e-01 100.0% 87.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.21e-01 97.6% 91.7%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 42.0 3.41e-01 85.7% 43.2%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 45.0 4.16e-01 100.0% 87.1%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.26e-01 100.0% 91.7%
1u7pD00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 42.0 2.92e-01 85.7% 45.3%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.56 41.0 3.89e-01 85.7% 91.2%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.43e-01 100.0% 67.6%
1l1oC02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 39.0 3.98e-01 97.6% 92.1%
5cfvA01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.54 39.0 2.99e-01 78.6% 43.9%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 39.0 3.16e-01 88.1% 46.5%
4msxA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 41.0 3.33e-01 92.9% 93.5%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 2.73e-01 92.9% 20.2%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.50 38.0 3.28e-01 100.0% 48.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942089 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.74 63.0 3.86e-01 100.0% 60.6%
3386335 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.69 59.0 3.55e-01 100.0% 65.9%
1954225 3174.4.1.1 ↗ beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain › DUF4265 0.67 53.0 4.68e-01 92.9% 86.6%
3971219 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.67 56.0 3.51e-01 100.0% 61.6%
3581696 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.16e-01 100.0% 90.0%
5074749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.52e-01 100.0% 64.3%
3992244 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 48.0 4.06e-01 88.1% 73.8%
4015427 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 3.36e-01 97.6% 21.4%
3227319 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.63 46.0 3.48e-01 88.1% 30.4%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.62 50.0 4.28e-01 100.0% 55.0%
4515677 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.61 43.0 3.25e-01 78.6% 47.4%
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.61 44.0 3.31e-01 76.2% 77.3%
3463111 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 38.0 3.46e-01 88.1% 45.0%
3939950 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.59 44.0 3.73e-01 88.1% 72.5%
3739728 376.1.4.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.59 41.0 3.85e-01 90.5% 54.5%
3718984 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.59 46.0 4.05e-01 90.5% 70.8%
5023381 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 3.95e-01 95.2% 64.0%
3234632 389.1.2.9 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › C6 0.57 41.0 3.48e-01 88.1% 65.6%
5059258 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.57 43.0 2.86e-01 95.2% 17.7%
3854638 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.57 44.0 3.60e-01 97.6% 49.0%
4525958 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.57 42.0 3.27e-01 88.1% 33.3%
3715776 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 3.99e-01 97.6% 63.1%
3400851 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 4.01e-01 81.0% 75.6%
3733658 3468.1.1.0 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.55 39.0 2.77e-01 76.2% 51.0%
3957884 4294.1.1.5 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › DUF3179 0.54 43.0 3.31e-01 95.2% 60.9%
3926304 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.54 41.0 3.58e-01 85.7% 60.0%
3585646 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 3.99e-01 81.0% 90.0%
5037381 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.53 38.0 3.71e-01 81.0% 84.0%
3202215 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.52 39.0 2.69e-01 92.9% 20.0%
3815246 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.51 39.0 3.60e-01 95.2% 98.5%
4030676 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 38.0 3.49e-01 90.5% 78.5%
3843531 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 35.0 2.94e-01 85.7% 40.0%