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AF323668.1__AAK08267.1__X__00042
Bact-VirAF323668.1__AAK08267.1__X__00042
Identity
- Accession:
- AF323668 ↗
- Kingdom:
- phage
Quality
78.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 352-406
Domain cluster:
rep: OM654374.1__UNY40108.1__KLEA5_gp04__00004__D345-405
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iufA02 | 1.20.1370.20 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain | 0.60 | 43.0 | 3.62e-01 | 92.7% | 43.9% |
| 3w6vA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.53 | 41.0 | 3.52e-01 | 98.2% | 88.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992849 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.67 | 48.0 | 4.23e-01 | 76.4% | 58.7% |
| 5030797 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.64 | 47.0 | 3.95e-01 | 78.2% | 50.0% |
| 4966880 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.62 | 50.0 | 4.07e-01 | 85.5% | 51.6% |
| 4455989 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.55 | 38.0 | 3.68e-01 | 74.5% | 78.5% |
| 3944775 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.55 | 39.0 | 3.88e-01 | 80.0% | 95.0% |
| 4034245 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.54 | 38.0 | 3.70e-01 | 76.4% | 81.5% |
| 3948459 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.52 | 37.0 | 3.55e-01 | 74.5% | 78.5% |
| 2670619 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.51 | 39.0 | 3.76e-01 | 85.5% | 89.1% |
| 3291209 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.51 | 36.0 | 3.09e-01 | 83.6% | 98.2% |
D2
medium
residues 69-79_298-351
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vjxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 52.0 | 4.05e-01 | 100.0% | 84.6% |
| 5c9gA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.56 | 37.0 | 3.96e-01 | 72.3% | 80.7% |
| 5hvmA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 43.0 | 3.06e-01 | 95.4% | 35.1% |
D3
medium
residues 80-193
Domain cluster:
rep: OR354840.1__WNM54417.1__CoNPh17_CDS0221__00221__D95-178
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04860.18 best | Phage_portal | 60.1 | 3.00e-16 | 100.0% | 31.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.80 | 61.0 | 5.89e-01 | 99.1% | 71.7% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.58 | 40.0 | 4.07e-01 | 87.7% | 71.7% |
| 2l03A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 30.0 | 3.58e-01 | 74.6% | 81.1% |
| 2xfaA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 39.0 | 3.67e-01 | 97.4% | 60.1% |
| 5eokA04 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.53 | 31.0 | 3.57e-01 | 76.3% | 79.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942943 | 4056.1.1.1 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 | 0.67 | 61.0 | 4.69e-01 | 100.0% | 68.2% |
| 3593996 | 228.1.1.0 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C | 0.55 | 41.0 | 3.83e-01 | 100.0% | 62.5% |
| 3566967 | 220.1.1.170 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin | 0.53 | 43.0 | 4.53e-01 | 100.0% | 94.3% |
| 3478704 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 31.0 | 3.78e-01 | 70.2% | 96.9% |
| 3740216 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.52 | 42.0 | 3.99e-01 | 86.8% | 97.0% |
| 3510148 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 41.0 | 3.93e-01 | 85.1% | 85.4% |
| 3273591 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 39.0 | 3.77e-01 | 83.3% | 76.9% |
| 3667379 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.50 | 40.0 | 3.90e-01 | 86.8% | 95.4% |
| 3259781 | 312.1.1.6 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 | 0.50 | 35.0 | 2.89e-01 | 71.9% | 62.6% |
| 3740761 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.50 | 40.0 | 3.24e-01 | 85.1% | 46.8% |
| 3259572 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 39.0 | 3.54e-01 | 83.3% | 81.9% |
D4
medium
residues 196-281