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AF323668.1__AAK08279.1__X__00054
Bact-VirAF323668.1__AAK08279.1__X__00054
Identity
- Accession:
- AF323668 ↗
- Kingdom:
- phage
Quality
85.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 385-449
Domain cluster:
rep: NC_019449.1__YP_007002359.1__F368_gp20__00020__D364-427
D2
high
residues 595-741
Domain cluster:
rep: NC_073481.1__YP_010756090.1__QEJ66_gp08__00008__D21-190
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18013.7 best | Phage_lysozyme2 | 104.2 | 9.00e-30 | 98.0% | 95.6% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ct5A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.89 | 83.0 | 8.04e-01 | 100.0% | 88.7% |
| 1hfxA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.67 | 51.0 | 5.55e-01 | 100.0% | 94.3% |
| 6ukcA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.67 | 54.0 | 5.68e-01 | 98.6% | 93.2% |
| 4yf2A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.65 | 51.0 | 5.46e-01 | 100.0% | 93.1% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.64 | 59.0 | 5.47e-01 | 99.3% | 97.8% |
| 153lA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.63 | 55.0 | 5.08e-01 | 100.0% | 74.1% |
| 6cfcA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.60 | 53.0 | 5.20e-01 | 95.2% | 90.1% |
| 2hs5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 20.0 | 2.85e-01 | 72.1% | 64.2% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 23.0 | 2.81e-01 | 76.9% | 58.1% |
| 4fdyA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.52 | 48.0 | 4.67e-01 | 99.3% | 96.9% |
| 2dwkA00 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.51 | 36.0 | 3.49e-01 | 87.8% | 64.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1253692 | 235.1.1.23 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 | 0.90 | 84.0 | 8.04e-01 | 100.0% | 87.0% |
| 3289790 | 235.1.1.23 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 | 0.80 | 77.0 | 7.54e-01 | 100.0% | 96.1% |
| 3254511 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.74 | 52.0 | 5.99e-01 | 100.0% | 99.0% |
| 3284481 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.72 | 61.0 | 6.25e-01 | 100.0% | 93.6% |
| 3396023 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.67 | 50.0 | 5.52e-01 | 99.3% | 95.8% |
| 3947473 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.67 | 54.0 | 5.41e-01 | 95.9% | 84.0% |
| 4282584 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.63 | 57.0 | 5.31e-01 | 100.0% | 92.4% |
| 4956936 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.61 | 37.0 | 2.70e-01 | 79.6% | 22.0% |
| 4258903 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.58 | 51.0 | 4.92e-01 | 94.6% | 95.2% |
D3
high
residues 767-890
Domain cluster:
rep: LR990834.1__CAD7757509.1__ATHO_20__00020__D167-317
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01551.30 best | Peptidase_M23 | 99.6 | 1.30e-28 | 79.8% | 92.7% |
D4
medium
residues 1-182_323-341
Domain cluster:
rep: GQ141189.1__ADD65705.1__BBP_0925__00007__D1-178
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.71 | 35.0 | 4.81e-01 | 89.1% | 90.5% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.71 | 25.0 | 3.66e-01 | 79.6% | 68.1% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 30.0 | 4.32e-01 | 99.0% | 90.8% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.66 | 34.0 | 4.42e-01 | 100.0% | 86.3% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.64 | 31.0 | 4.53e-01 | 83.6% | 100.0% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.63 | 32.0 | 4.20e-01 | 100.0% | 87.2% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 33.0 | 4.20e-01 | 100.0% | 86.9% |
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.58 | 31.0 | 4.19e-01 | 94.0% | 98.1% |
| 6hhuA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 24.0 | 3.80e-01 | 85.1% | 100.0% |
| 1v4pC01 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.57 | 29.0 | 3.84e-01 | 88.1% | 88.9% |
| 4pbdA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 27.0 | 3.74e-01 | 86.6% | 92.2% |
| 3x17A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 30.0 | 3.91e-01 | 90.5% | 100.0% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 34.0 | 3.92e-01 | 99.0% | 84.4% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 30.0 | 3.74e-01 | 93.5% | 87.2% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 34.0 | 3.90e-01 | 97.0% | 83.6% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 26.0 | 3.46e-01 | 79.1% | 83.5% |
| 6k3lB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 21.0 | 2.95e-01 | 74.6% | 74.7% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 34.0 | 3.89e-01 | 97.5% | 84.6% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 34.0 | 3.81e-01 | 97.5% | 83.3% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.71e-01 | 88.6% | 99.0% |
| 4f07E00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 33.0 | 3.87e-01 | 98.0% | 88.6% |
| 3cb0D00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 34.0 | 3.81e-01 | 97.5% | 83.9% |
| 4xhyA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 34.0 | 3.86e-01 | 98.5% | 85.7% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.50 | 40.0 | 4.31e-01 | 100.0% | 94.9% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3968971 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.77 | 33.0 | 5.02e-01 | 86.6% | 92.2% |
| 3971461 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 33.0 | 4.97e-01 | 86.6% | 92.2% |
| 4608778 | 1.1.7.107 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 | 0.76 | 35.0 | 4.61e-01 | 88.6% | 75.8% |
| 3974181 | 1.1.5.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 | 0.75 | 32.0 | 4.78e-01 | 86.1% | 90.0% |
| 159 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.71 | 24.0 | 3.60e-01 | 79.1% | 67.8% |
| 3210962 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 32.0 | 4.57e-01 | 87.6% | 92.6% |
| 4991187 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 33.0 | 4.74e-01 | 89.6% | 97.9% |
| 1871771 | 1.1.5.43 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like | 0.68 | 29.0 | 3.85e-01 | 86.6% | 70.3% |
| 2137681 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.68 | 34.0 | 4.56e-01 | 100.0% | 88.1% |
| 4952909 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 31.0 | 4.26e-01 | 86.1% | 82.9% |
| 4033714 | 1.1.13.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail | 0.68 | 33.0 | 4.64e-01 | 83.6% | 96.8% |
| 4936008 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.67 | 32.0 | 4.62e-01 | 89.1% | 95.8% |
| 3389361 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 31.0 | 4.38e-01 | 89.6% | 90.5% |
| 160389 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 35.0 | 4.45e-01 | 100.0% | 82.1% |
| 3243970 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 33.0 | 4.55e-01 | 87.6% | 93.0% |
| 4137973 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.66 | 31.0 | 3.98e-01 | 86.1% | 77.3% |
| 3237442 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 32.0 | 4.43e-01 | 88.6% | 93.0% |
| 4257535 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.65 | 33.0 | 4.17e-01 | 100.0% | 81.7% |
| 3720023 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 33.0 | 4.53e-01 | 95.0% | 97.0% |
| 3237729 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 31.0 | 4.22e-01 | 97.5% | 87.6% |
| 4379249 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.64 | 35.0 | 4.40e-01 | 100.0% | 85.6% |
| 4156970 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.64 | 30.0 | 3.78e-01 | 86.1% | 71.7% |
| 3289340 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 26.0 | 4.10e-01 | 88.1% | 96.2% |
| 4864011 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.63 | 30.0 | 4.01e-01 | 88.1% | 84.8% |
| 3267872 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 34.0 | 4.23e-01 | 93.5% | 83.1% |
| 3722811 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.62 | 34.0 | 4.36e-01 | 89.1% | 91.3% |
| 3332690 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 29.0 | 3.98e-01 | 90.0% | 87.0% |
| 4278559 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.61 | 29.0 | 3.74e-01 | 86.1% | 78.2% |
| 3968097 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.60 | 31.0 | 4.10e-01 | 100.0% | 90.0% |
| 4023972 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.60 | 28.0 | 3.84e-01 | 92.0% | 84.8% |
| 4539244 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.60 | 27.0 | 3.53e-01 | 86.6% | 74.3% |
| 3263022 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 27.0 | 3.97e-01 | 85.6% | 97.6% |
| 3299946 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.59 | 32.0 | 4.15e-01 | 89.6% | 91.3% |
| 3256920 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 34.0 | 4.14e-01 | 96.5% | 92.0% |
| 4527829 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 27.0 | 3.73e-01 | 86.1% | 94.7% |
| 3900933 | 11.1.1.54 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 | 0.55 | 30.0 | 3.55e-01 | 89.1% | 75.7% |
| 3952346 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.53 | 26.0 | 3.03e-01 | 82.6% | 63.4% |
| 4006501 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.53 | 26.0 | 2.96e-01 | 83.1% | 61.1% |
| 4629425 | 11.1.1.1369 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1410 | 0.53 | 26.0 | 3.65e-01 | 86.1% | 97.9% |
| 3685973 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 30.0 | 3.70e-01 | 89.1% | 90.4% |
| 3275858 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 26.0 | 3.59e-01 | 88.6% | 100.0% |
| 3598686 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.51 | 33.0 | 3.95e-01 | 98.5% | 95.6% |
| 4889074 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.51 | 26.0 | 3.43e-01 | 82.6% | 88.3% |
| 3960853 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.51 | 26.0 | 3.02e-01 | 89.6% | 65.5% |
D5
medium
residues 188-322_342-364
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06605.19 best | Prophage_tail | 31.8 | 2.00e-07 | 87.3% | 77.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3573688 | 3071.1.1.6 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 | 0.70 | 32.0 | 4.53e-01 | 77.8% | 87.5% |
| 3964699 | 3071.1.1.6 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 | 0.66 | 31.0 | 4.46e-01 | 75.9% | 100.0% |
| 2475125 | 3071.1.1.7 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 | 0.52 | 46.0 | 4.61e-01 | 100.0% | 96.8% |
| 4889790 | 3071.1.1.7 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 | 0.50 | 45.0 | 4.47e-01 | 100.0% | 97.6% |
D6
medium
residues 470-570
Domain cluster:
rep: NC_055907.1__YP_010113710.1__KNV65_gp086__00086__D493-591