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AF323671.1__AAK08406.1__X__00002

Bact-Vir

AF323671.1__AAK08406.1__X__00002

Identity

Accession:
AF323671 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

TaxID: 151538

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08951.16 best EntA_Immun 57.4 1.70e-15 94.0% 93.8%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.81 74.0 7.44e-01 98.8% 98.8%
1yjgA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.79 60.0 4.77e-01 79.8% 66.2%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.78 58.0 4.55e-01 77.4% 83.6%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.78 67.0 6.62e-01 92.9% 100.0%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.78 68.0 6.50e-01 95.2% 85.7%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.76 53.0 4.70e-01 76.2% 52.6%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.74 51.0 4.61e-01 89.3% 53.6%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.74 62.0 6.46e-01 91.7% 100.0%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.74 66.0 5.94e-01 100.0% 96.6%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.73 64.0 5.43e-01 100.0% 68.8%
3dyjA02 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.70 54.0 4.37e-01 81.0% 58.9%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.70 53.0 4.48e-01 81.0% 90.7%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.70 61.0 5.22e-01 100.0% 74.8%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.68 61.0 4.99e-01 100.0% 67.8%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.67 60.0 4.98e-01 100.0% 70.2%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.66 56.0 5.14e-01 96.4% 98.2%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 58.0 4.93e-01 100.0% 89.4%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.65 57.0 4.78e-01 100.0% 73.0%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.65 49.0 4.34e-01 81.0% 72.7%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.64 55.0 5.38e-01 100.0% 100.0%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 44.0 4.31e-01 71.4% 94.6%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 53.0 4.88e-01 100.0% 71.4%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.62 45.0 4.70e-01 75.0% 86.8%
2lmgA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 48.0 5.04e-01 83.3% 100.0%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 52.0 4.70e-01 95.2% 95.8%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 49.0 4.73e-01 86.9% 89.5%
1yfmA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.61 49.0 4.31e-01 88.1% 70.6%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.61 43.0 4.54e-01 75.0% 98.7%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 41.0 3.73e-01 71.4% 85.0%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.60 45.0 4.91e-01 88.1% 100.0%
4fjvA02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.59 45.0 3.79e-01 82.1% 84.7%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.59 49.0 4.25e-01 92.9% 99.2%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.58 40.0 3.86e-01 72.6% 87.0%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 47.0 3.90e-01 92.9% 51.8%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.58 50.0 5.04e-01 100.0% 94.0%
5zw7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 47.0 4.00e-01 98.8% 96.1%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.55 43.0 4.08e-01 84.5% 90.3%
7dswA01 1.20.1530.20 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › 0.55 46.0 3.00e-01 94.0% 74.8%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.55 45.0 4.34e-01 90.5% 85.4%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 45.0 3.77e-01 96.4% 60.6%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.52 40.0 3.91e-01 98.8% 75.3%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.51 36.0 3.61e-01 72.6% 91.8%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587205 633.2.1.1 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun 0.96 87.0 8.47e-01 95.2% 87.8%
3589212 633.2.1.1 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun 0.91 78.0 8.27e-01 90.5% 100.0%
4267135 633.2.1.0 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.89 79.0 7.90e-01 92.9% 95.3%
4928468 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.84 78.0 7.70e-01 100.0% 96.6%
4956583 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.83 78.0 7.47e-01 100.0% 90.4%
1918952 633.2.1.1 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun 0.83 76.0 7.22e-01 98.8% 85.7%
5053481 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.83 76.0 7.63e-01 98.8% 98.8%
4281149 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.83 77.0 7.34e-01 100.0% 90.5%
4049578 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.82 77.0 7.57e-01 100.0% 96.6%
5068709 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.82 74.0 7.33e-01 97.6% 93.3%
5001354 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.82 75.0 7.40e-01 98.8% 94.4%
5028850 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.81 73.0 7.40e-01 96.4% 98.8%
4932900 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.81 75.0 7.22e-01 100.0% 91.4%
4189563 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.81 75.0 7.40e-01 100.0% 97.8%
4945865 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.81 75.0 7.35e-01 100.0% 96.6%
3717920 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.79 72.0 5.85e-01 100.0% 71.6%
3651030 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.79 72.0 5.62e-01 100.0% 64.6%
4942190 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.79 69.0 6.79e-01 95.2% 92.0%
5055634 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.78 67.0 6.84e-01 92.9% 100.0%
2878134 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.78 58.0 4.84e-01 78.6% 70.0%
5060908 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.78 69.0 5.75e-01 100.0% 85.8%
3314513 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.76 69.0 5.53e-01 100.0% 62.6%
136505 601.3.1.1 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.76 53.0 4.57e-01 76.2% 48.8%
4964085 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.75 53.0 4.56e-01 94.0% 47.7%
5020941 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.74 55.0 4.72e-01 89.3% 50.8%
3442863 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.73 66.0 5.23e-01 100.0% 59.4%
5066095 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.73 52.0 4.40e-01 94.0% 45.0%
4939929 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.72 52.0 4.40e-01 89.3% 46.7%
4944123 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.72 54.0 4.66e-01 92.9% 51.5%
5082038 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.71 51.0 4.54e-01 94.0% 52.5%
3338353 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.71 64.0 5.16e-01 100.0% 61.9%
4993486 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.71 54.0 4.38e-01 92.9% 44.7%
4445194 633.31.1.0 alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase 0.71 55.0 5.94e-01 91.7% 100.0%
4952825 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.71 51.0 4.54e-01 88.1% 53.3%
4932273 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.70 50.0 4.51e-01 88.1% 54.8%
5066145 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.70 51.0 4.36e-01 88.1% 47.1%
4999943 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.70 52.0 4.58e-01 92.9% 53.6%
3971692 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.70 51.0 4.52e-01 92.9% 52.8%
5058225 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.69 53.0 4.70e-01 91.7% 56.7%
4041623 632.2.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › FIVAR 0.69 53.0 5.64e-01 81.0% 94.7%
5080467 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.68 51.0 4.32e-01 92.9% 47.9%
3740779 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.68 46.0 4.84e-01 70.2% 84.0%
4966313 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.68 51.0 3.57e-01 88.1% 25.3%
4946174 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 49.0 4.85e-01 86.9% 72.2%
5002923 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.67 50.0 4.28e-01 92.9% 49.6%
3855331 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 5.58e-01 84.5% 98.6%
4538846 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.66 53.0 5.33e-01 89.3% 83.5%
3751123 102.4.1.0 alpha arrays › HhH/H2TH › YozE-like › YozE-like 0.66 51.0 5.55e-01 84.5% 98.6%
3494239 192.29.1.137 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Otopetrin 0.65 59.0 4.49e-01 100.0% 72.8%
4942061 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 49.0 4.90e-01 81.0% 96.5%
3411883 604.1.1.63 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.62 42.0 3.79e-01 70.2% 89.2%
3277855 3562.1.1.3 alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › DUF6328 0.61 54.0 4.47e-01 96.4% 80.0%
5012659 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.60 54.0 5.14e-01 100.0% 96.0%
5060248 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.58 43.0 4.60e-01 78.6% 97.1%
3954237 532.2.1.16 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › DUF732 0.58 42.0 4.35e-01 76.2% 98.8%
4374279 377.1.1.11 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.58 49.0 3.92e-01 94.0% 97.1%
4949685 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.56 48.0 3.35e-01 98.8% 42.9%
4585864 377.1.1.11 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.56 49.0 3.88e-01 97.6% 92.0%
3754716 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.53 44.0 3.85e-01 95.2% 85.2%
2530252 2500.1.1.3 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like 0.53 47.0 2.79e-01 100.0% 47.2%
3610902 1189.1.1.2 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG_B 0.52 46.0 3.15e-01 98.8% 66.7%
4527308 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 2.98e-01 89.3% 50.6%
5078022 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.50 41.0 4.18e-01 94.0% 97.5%