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AF323671.1__AAK08427.1__X__00023

Bact-Vir

AF323671.1__AAK08427.1__X__00023

Identity

Accession:
AF323671 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Taxonomy

TaxID: 151538

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-180
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09250.17 best Prim-Pol 83.3 3.70e-23 94.4% 100.0%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2faoA01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.71 65.0 5.57e-01 100.0% 94.0%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.55 49.0 4.94e-01 94.4% 97.2%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 26.0 3.64e-01 70.2% 98.8%
4rl1A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.52 23.0 3.37e-01 70.2% 98.6%
4pcqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.52 26.0 3.56e-01 72.5% 97.6%
2dgxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 25.0 3.55e-01 70.2% 100.0%
2fphX02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 27.0 3.58e-01 79.8% 100.0%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 27.0 3.53e-01 73.6% 95.7%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 25.0 3.35e-01 71.9% 95.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280020 862.1.1.3 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.83 76.0 7.75e-01 100.0% 97.7%
4959587 862.1.1.3 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.81 72.0 7.39e-01 100.0% 97.6%
4960053 862.1.1.3 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.79 69.0 6.88e-01 91.6% 100.0%
4987159 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.70 63.0 5.56e-01 97.8% 91.9%
5066297 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.70 64.0 5.56e-01 100.0% 93.8%
4973338 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.69 59.0 4.99e-01 89.9% 90.5%
3976571 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 28.0 3.91e-01 71.3% 98.8%
3448756 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 30.0 3.96e-01 77.5% 100.0%
7175 862.1.1.2 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DUF1882 0.55 49.0 4.94e-01 94.4% 97.2%
3855393 304.9.1.13 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › GUCT 0.55 30.0 3.66e-01 78.1% 82.7%
3267479 304.9.1.36 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_10 0.53 30.0 3.69e-01 82.0% 87.3%
3530700 4.1.1.331 beta barrels › SH3 › SH3 › SH3 › DUF4708 0.53 27.0 3.65e-01 86.5% 98.8%
3856783 304.7.1.23 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › DUF4708 0.52 27.0 3.60e-01 87.1% 98.8%
3585521 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 25.0 3.57e-01 70.2% 100.0%
3617948 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 31.0 3.70e-01 78.1% 91.8%
1872609 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.52 26.0 3.36e-01 71.3% 85.6%
3360104 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 28.0 3.57e-01 74.2% 92.0%
3253269 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 28.0 3.58e-01 77.0% 100.0%
3433562 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.51 25.0 3.35e-01 71.3% 96.2%
3458718 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 27.0 3.54e-01 71.3% 98.9%
3927592 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 32.0 3.58e-01 79.2% 83.8%
D2 high residues 195-261
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08708.17 best PriCT_1 44.3 1.50e-11 91.0% 88.1%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.73 64.0 5.80e-01 97.0% 75.3%
2bk9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.71 52.0 4.02e-01 79.1% 80.4%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.69 51.0 4.46e-01 77.6% 94.8%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.67 58.0 4.53e-01 98.5% 49.3%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 47.0 4.40e-01 74.6% 68.2%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 49.0 3.74e-01 79.1% 74.7%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 47.0 4.16e-01 76.1% 88.8%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.65 52.0 4.30e-01 89.6% 90.6%
2z16B01 1.20.91.10 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 0.65 50.0 4.83e-01 94.0% 74.4%
3k1rA01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.65 52.0 4.94e-01 100.0% 75.3%
5ctrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 54.0 3.62e-01 100.0% 27.2%
4acoA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.64 54.0 4.64e-01 95.5% 84.5%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 47.0 4.49e-01 79.1% 86.1%
4e6hA00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 52.0 3.12e-01 100.0% 11.8%
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.63 51.0 4.21e-01 94.0% 80.2%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 46.0 4.00e-01 77.6% 59.4%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.62 53.0 4.59e-01 100.0% 69.6%
4y6cA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 50.0 3.61e-01 94.0% 33.5%
2yhcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 50.0 3.64e-01 100.0% 30.6%
4lgvA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 54.0 3.91e-01 100.0% 37.0%
1s2xA00 1.20.190.30 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ 0.61 51.0 3.86e-01 98.5% 100.0%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 50.0 3.39e-01 100.0% 35.6%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.60 46.0 3.84e-01 88.1% 58.8%
3k9iA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 48.0 4.30e-01 100.0% 62.1%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.59 44.0 3.62e-01 82.1% 63.2%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 44.0 3.58e-01 83.6% 56.1%
3qkyA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 47.0 3.34e-01 100.0% 25.9%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.58 44.0 3.74e-01 82.1% 87.3%
2qfcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 48.0 3.26e-01 98.5% 25.4%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.58 41.0 3.21e-01 77.6% 71.4%
2vxxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 45.0 3.39e-01 86.6% 79.1%
3beeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 47.0 4.38e-01 100.0% 71.4%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 49.0 3.59e-01 100.0% 71.2%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.57 50.0 4.98e-01 100.0% 97.1%
3mabA00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 45.0 4.28e-01 100.0% 74.1%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 45.0 3.36e-01 88.1% 80.7%
1elkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 46.0 3.70e-01 100.0% 61.4%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.56 45.0 4.03e-01 100.0% 71.2%
3u4qB04 6.10.140.1030 Special › Helix non-globular › Helix Hairpins › 0.54 45.0 4.54e-01 100.0% 92.8%
5mq1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 40.0 3.48e-01 85.1% 56.5%
1zvwA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.52 42.0 4.31e-01 100.0% 98.5%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 43.0 3.33e-01 98.5% 80.6%
3iq1B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 42.0 3.27e-01 97.0% 83.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058298 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.93 87.0 6.98e-01 100.0% 55.9%
3586830 182.1.3.2 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › PriCT_1 0.91 85.0 6.95e-01 100.0% 64.3%
5054621 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.90 82.0 6.50e-01 100.0% 52.0%
5030284 182.1.3.3 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg 0.89 82.0 6.62e-01 100.0% 55.0%
4942022 182.1.3.3 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg 0.89 82.0 6.58e-01 100.0% 55.0%
5081313 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.87 80.0 7.14e-01 98.5% 73.3%
5064030 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.84 75.0 6.64e-01 98.5% 70.5%
4177876 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.81 74.0 6.31e-01 100.0% 66.7%
4984330 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.72 63.0 5.78e-01 100.0% 86.7%
3780254 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 4.14e-01 100.0% 69.3%
3289554 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.66 57.0 4.67e-01 94.0% 83.3%
4968713 2006.1.4.50 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.66 57.0 4.38e-01 100.0% 100.0%
3210434 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.63 55.0 3.76e-01 100.0% 89.0%
3932026 309.1.1.4 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.62 52.0 3.73e-01 94.0% 71.9%
5047770 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.62 45.0 4.15e-01 80.6% 81.7%
3608549 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 3.04e-01 100.0% 16.4%
3491800 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 51.0 4.21e-01 100.0% 50.8%
3714154 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 46.0 3.35e-01 82.1% 67.6%
3583862 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 48.0 4.01e-01 95.5% 74.1%
3576959 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.58 44.0 3.25e-01 82.1% 58.4%
3278832 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.58 47.0 3.95e-01 98.5% 74.1%
3602790 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 47.0 3.44e-01 95.5% 85.9%
4947640 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.57 45.0 3.02e-01 86.6% 65.1%
3692317 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.56 47.0 3.03e-01 100.0% 76.2%
5007987 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.56 46.0 3.97e-01 100.0% 70.0%
3838016 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 44.0 3.46e-01 95.5% 53.9%
3708428 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 3.45e-01 100.0% 50.0%
None 0.53 44.0 2.73e-01 98.5% 15.9%
5040839 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 43.0 3.34e-01 97.0% 85.9%
4034377 4982.1.1.2 alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › RsbU_N 0.52 44.0 4.08e-01 98.5% 83.3%
3549402 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.52 44.0 2.71e-01 100.0% 15.4%
None 0.51 43.0 2.65e-01 100.0% 14.2%