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AF363675.1__AAL09974.1__X__00002
Bact-VirAF363675.1__AAL09974.1__X__00002
Identity
- Accession:
- AF363675 ↗
- Kingdom:
- phage
Quality
61.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nodensvirus›
Synechococcus_phage_S-PM2
TaxID: 238854
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 230-307
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.77 | 51.0 | 5.58e-01 | 89.7% | 82.8% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 51.0 | 3.85e-01 | 84.6% | 78.9% |
| 3e7qA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 54.0 | 3.99e-01 | 100.0% | 36.1% |
| 2a7oA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.62 | 56.0 | 5.17e-01 | 100.0% | 84.0% |
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.60 | 53.0 | 4.33e-01 | 100.0% | 74.3% |
| 2dgzA01 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.57 | 45.0 | 4.33e-01 | 98.7% | 75.3% |
| 1jfzA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.57 | 50.0 | 4.08e-01 | 100.0% | 74.3% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 44.0 | 3.52e-01 | 85.9% | 71.5% |
| 2np3A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 48.0 | 3.98e-01 | 97.4% | 89.4% |
| 7egfc01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.56 | 45.0 | 4.44e-01 | 91.0% | 96.5% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 48.0 | 4.03e-01 | 96.2% | 89.6% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 46.0 | 4.11e-01 | 93.6% | 90.3% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.53 | 43.0 | 4.31e-01 | 100.0% | 86.4% |
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.52 | 44.0 | 4.50e-01 | 100.0% | 96.2% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.51 | 42.0 | 4.01e-01 | 91.0% | 87.8% |
| 2z16B01 | 1.20.91.10 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 | 0.51 | 39.0 | 3.99e-01 | 92.3% | 84.6% |
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.51 | 45.0 | 3.46e-01 | 100.0% | 63.3% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.50 | 44.0 | 3.79e-01 | 100.0% | 83.2% |
| 6cnzF00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.50 | 44.0 | 3.54e-01 | 100.0% | 56.3% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.50 | 38.0 | 3.28e-01 | 79.5% | 62.4% |
| 2z15A00 | 3.90.640.90 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain | 0.50 | 43.0 | 3.81e-01 | 98.7% | 66.4% |
| 1bgcA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 40.0 | 3.12e-01 | 97.4% | 41.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3420476 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 39.0 | 3.98e-01 | 87.2% | 62.7% |
| 3873445 | 5054.1.1.80 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PF29331 | 0.62 | 57.0 | 4.04e-01 | 100.0% | 67.6% |
| 5026218 | 142.1.1.51 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Ammonium_transp | 0.62 | 55.0 | 5.32e-01 | 100.0% | 92.2% |
| 3589724 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.57 | 49.0 | 4.39e-01 | 98.7% | 80.9% |
| 3730652 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.57 | 49.0 | 4.39e-01 | 100.0% | 97.4% |
| 55657 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.56 | 50.0 | 4.77e-01 | 98.7% | 100.0% |
| 3740181 | 142.1.1.5 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI | 0.55 | 48.0 | 4.63e-01 | 100.0% | 91.1% |
| 3786420 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.55 | 45.0 | 4.15e-01 | 93.6% | 74.3% |
| 3245673 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.54 | 48.0 | 4.23e-01 | 100.0% | 71.3% |
| 3583884 | 109.4.1.570 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps8 | 0.53 | 34.0 | 2.00e-01 | 74.4% | 6.8% |
| 3207585 | 142.3.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C | 0.53 | 46.0 | 4.66e-01 | 98.7% | 100.0% |
| 4026864 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.53 | 43.0 | 4.17e-01 | 91.0% | 84.4% |
| 4961961 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.53 | 36.0 | 3.69e-01 | 71.8% | 89.3% |
| 3270778 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.52 | 42.0 | 3.84e-01 | 85.9% | 77.0% |
| 4011169 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.52 | 39.0 | 3.82e-01 | 96.2% | 74.1% |
| 3742544 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.52 | 45.0 | 4.07e-01 | 100.0% | 82.7% |