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AF396866.1__AAK94367.1__X__00033

Bact-Vir

AF396866.1__AAK94367.1__X__00033

Identity

Accession:
AF396866 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-103
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.83 60.0 6.51e-01 100.0% 93.8%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 72.0 5.00e-01 100.0% 32.8%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.80 71.0 6.43e-01 100.0% 77.8%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.80 70.0 6.86e-01 96.6% 90.6%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.79 71.0 6.10e-01 100.0% 64.8%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 66.0 6.08e-01 96.6% 72.4%
1yq1A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.78 66.0 5.36e-01 100.0% 50.0%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.78 69.0 5.98e-01 100.0% 69.2%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.78 68.0 6.64e-01 98.3% 92.2%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.77 68.0 5.60e-01 100.0% 56.1%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.77 63.0 4.78e-01 91.5% 63.1%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 64.0 5.68e-01 93.2% 64.7%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.75 66.0 5.34e-01 100.0% 52.6%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 65.0 6.44e-01 96.6% 91.9%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.75 57.0 4.45e-01 81.4% 39.7%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 61.0 6.22e-01 91.5% 94.8%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.75 63.0 5.71e-01 100.0% 68.7%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.74 67.0 4.96e-01 100.0% 57.2%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 66.0 5.43e-01 100.0% 61.3%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.73 63.0 5.08e-01 100.0% 50.0%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 56.0 5.55e-01 100.0% 80.6%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.72 62.0 5.06e-01 100.0% 53.8%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 61.0 5.93e-01 100.0% 97.1%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 60.0 5.64e-01 100.0% 84.0%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.70 60.0 4.86e-01 100.0% 94.2%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.70 60.0 5.20e-01 100.0% 62.1%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.69 58.0 4.68e-01 100.0% 48.3%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 55.0 5.75e-01 93.2% 100.0%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.68 55.0 4.19e-01 91.5% 62.7%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.68 55.0 4.51e-01 93.2% 47.9%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 54.0 5.06e-01 100.0% 70.3%
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.67 59.0 4.99e-01 100.0% 59.4%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.66 52.0 5.00e-01 88.1% 75.7%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 54.0 5.13e-01 100.0% 78.7%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.65 57.0 4.73e-01 98.3% 100.0%
3wfwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 46.0 3.53e-01 74.6% 57.2%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.65 52.0 5.06e-01 93.2% 81.5%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 54.0 5.47e-01 98.3% 96.6%
6cw0A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.64 56.0 4.67e-01 100.0% 100.0%
1e7uA05 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.64 50.0 3.56e-01 88.1% 40.8%
2k9pA00 1.10.287.920 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pheromone alpha factor receptor. 0.64 54.0 4.97e-01 100.0% 73.8%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 51.0 4.36e-01 100.0% 56.6%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.60 42.0 4.07e-01 74.6% 64.7%
3urzA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 50.0 3.57e-01 100.0% 44.6%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.59 48.0 4.38e-01 89.8% 68.4%
1l3eB00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.58 48.0 4.16e-01 98.3% 69.3%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 44.0 4.09e-01 86.4% 83.5%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 40.0 3.94e-01 72.9% 79.0%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.56 43.0 3.95e-01 88.1% 61.2%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 45.0 3.43e-01 88.1% 36.9%
5mmjn01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 42.0 3.78e-01 89.8% 58.4%
1t33A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 45.0 3.37e-01 94.9% 38.0%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 37.0 2.80e-01 72.9% 27.6%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 40.0 4.14e-01 84.7% 94.4%
5aj3N01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 42.0 3.82e-01 98.3% 76.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052557 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.83 73.0 4.97e-01 100.0% 29.2%
3960120 192.15.1.222 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › AA_permease_2 0.81 73.0 4.81e-01 100.0% 26.1%
5063166 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.81 69.0 5.70e-01 100.0% 53.3%
3813837 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.80 73.0 6.71e-01 100.0% 85.3%
4949008 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.80 63.0 4.18e-01 84.7% 24.5%
3679373 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.80 68.0 6.61e-01 100.0% 86.2%
3769852 7515.1.1.4 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,Sulfatase_C 0.78 70.0 4.01e-01 100.0% 10.5%
4014198 611.9.1.0 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.78 69.0 5.31e-01 100.0% 43.7%
4238998 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 67.0 6.31e-01 100.0% 80.0%
3585753 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.76 52.0 4.51e-01 72.9% 46.7%
4949876 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 66.0 6.45e-01 100.0% 90.8%
3906696 101.1.2.725 alpha arrays › HTH › HTH › winged helix domain › TAPR1-like 0.75 66.0 5.28e-01 100.0% 50.0%
3740294 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.75 56.0 4.12e-01 79.7% 42.7%
3461932 3922.1.1.189 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF630 0.75 66.0 5.68e-01 100.0% 64.2%
3594129 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.75 66.0 4.51e-01 100.0% 39.1%
4385742 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 66.0 5.74e-01 100.0% 71.1%
4261872 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.74 62.0 5.47e-01 98.3% 62.2%
3527324 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.74 62.0 4.90e-01 100.0% 44.8%
3531423 5106.1.1.14 extended segments › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › PetG subunit of the cytochrome b6f complex › TMEM174 0.73 60.0 6.21e-01 91.5% 100.0%
3178900 192.2.1.30 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Uds1 0.73 63.0 4.79e-01 100.0% 42.1%
3887211 605.1.1.140 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HIG_1_N 0.73 59.0 5.64e-01 89.8% 88.6%
4034301 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.73 63.0 3.99e-01 100.0% 67.0%
3546710 3291.1.1.200 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › TAPR1-like 0.72 63.0 4.89e-01 100.0% 45.9%
3263557 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 58.0 4.72e-01 98.3% 45.8%
3195418 192.8.1.376 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › RRP36 0.72 60.0 5.29e-01 100.0% 63.2%
2914508 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.72 63.0 4.02e-01 98.3% 20.8%
3219921 5001.1.1.84 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz 0.71 61.0 3.89e-01 100.0% 20.3%
3388938 632.22.1.7 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › Membralin 0.70 61.0 4.15e-01 100.0% 26.7%
5055683 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.70 53.0 3.89e-01 89.8% 29.4%
3494616 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.69 60.0 5.38e-01 100.0% 69.4%
3265664 4336.1.1.0 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like 0.69 59.0 5.12e-01 94.9% 62.2%
3415522 4082.1.1.1 alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange 0.68 57.0 5.55e-01 100.0% 87.7%
3413284 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 3.47e-01 100.0% 21.9%
3906467 1008.1.1.106 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CSN5_C 0.68 58.0 5.17e-01 100.0% 65.6%
3576768 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 55.0 3.83e-01 100.0% 26.8%
3520738 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.66 55.0 4.20e-01 98.3% 39.4%
4674 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.66 54.0 5.31e-01 96.6% 87.7%
4169238 6130.1.1.1 alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.64 45.0 4.12e-01 76.3% 57.3%
None 0.63 47.0 3.11e-01 84.7% 18.5%
4029754 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 59.0 5.08e-01 100.0% 74.1%
3486786 165.3.1.0 alpha duplicates or obligate multimers › Dimerisation interlock › Phenylalanine zipper › Phenylalanine zipper 0.62 52.0 5.37e-01 96.6% 96.4%
5054424 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.62 49.0 4.49e-01 91.5% 65.0%